Selaginella moellendorffii: SELMODRAFT_81344
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Entry
SELMODRAFT_81344 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_81344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_81344
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
SELMODRAFT_81344
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
PRP4
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR19_1st
eIF2A
Beta-prop_SPT8
Ge1_WD40
WD40_like
PEP5_VPS11_N
Nbas_N
Motif
Other DBs
NCBI-GeneID:
9654568
NCBI-ProteinID:
XP_002964088
JGI:
81344
UniProt:
D8QZK5
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All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MAAEVAKTVALADIPTLHSDGAAAVAKKDEYEVSEASKVAREKHEKDMERILLQRRAAAL
AVPTSDAAVKEKLRQMGQPVTLFGEREMERRDRLRYLMADEGGDRLPQKQEAKEESVKIS
AVQKSTFYTEGTADLLRARMEILHFSVPRAADRIARAKRKRENPDEDEEQEIKSVLKSVA
NFSLDCSEIGDDRPLTGCAFSPDSALLATCGWTGVAKIWSVPDVKKVGALKGHHTERLTD
VVFSPDGQNIATASADRTAMVWDLQGNMKMAFKGHLTRLARIAFHPSGAYIGTTSFDKTW
RLWDVNTGAEVLLQEGHSRGLYGIAFQCDGSLVASCGMDALTRVWDLRTGRSIMALEGHV
KPVLGVDFSKNGYHLATGGEDHTCKIWDLRRKAMLYTIPAHSSLISQVKYEREDGYYLMT
ASFDNTAKAWSGRDFKPVKTLSGHEGKLTGVDVTSDNQYVVTVAHDRTIKLWSQKNSPAD
DKEDEEMPDVGEGEQQQHETQELAEMESEKEEQEDDEGEMEPPVQ
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggaggtcgccaagaccgtggcgctcgcggacatcccgacgctccactcggat
ggcgctgccgcggtagccaagaaggatgagtatgaggtgtccgaggcgagcaaggtcgcg
cgggagaagcatgagaaggacatggagaggatcttgctccagcggcgggcggctgcgctg
gcggtcccgaccagcgatgccgccgtgaaggagaagctgcggcagatgggccagccggtg
acgctgtttggggagcgcgagatggagcgccgggaccggctgcgctacctcatggccgat
gagggtggtgatcggctcccccagaagcaggaggccaaggaggagtccgtcaagatctcg
gctgtccagaagagcaccttctacaccgagggcactgcggacttgctgcgagcgaggatg
gagatcctccacttctccgttcctcgcgccgccgacaggattgctcgagcgaagcggaag
agggagaatccggacgaggacgaggagcaggagatcaagtcggtgctcaaatccgtcgcc
aacttctcgctggattgcagtgagattggcgacgacaggcccttgacgggatgcgcattc
tcgccagactcggcgcttctcgctacgtgtggctggactggtgtcgcaaagatctggagc
gtgcccgacgtgaaaaaagtgggagcgctcaaaggccatcacacggagaggttaacggac
gtcgtcttctctcccgatggacagaacatagcgacagcatctgcggatcggacagccatg
gtctgggaccttcaaggaaacatgaagatggctttcaagggccacttgacgcgcctggcg
aggatcgcgttccatccatcgggagcctacattggaacgaccagcttcgacaaaacttgg
aggctctgggatgtgaacaccggagcggaggtgctgctgcaagagggccacagccggggc
ctgtacggaatcgctttccagtgcgatggctcgctggtggcttcctgcggcatggatgcc
ttgacccgtgtgtgggatcttcgtaccggacggagtatcatggctctggagggtcatgtg
aagccggtgctgggtgtggatttctcgaagaacggctaccacttagcaaccggaggagag
gatcatacgtgcaagatctgggacttgaggaggaaggcaatgctctacaccattccggct
cactcctccctgatttcccaggtgaagtacgagcgcgaagatggatactatctcatgaca
gcttcttttgacaacacggccaaggcatggtcgggacgcgatttcaagcccgtgaagacg
ctatcgggacacgaagggaagctcacaggcgttgatgtaacttctgacaaccagtacgtt
gttacagtggctcacgacaggacaatcaagctgtggtcgcagaagaacagcccagcggat
gacaaagaagatgaagaaatgcctgacgtgggagagggagagcagcagcagcatgagaca
caagaactcgcagaaatggaatcagaaaaggaagaacaagaagatgacgaaggagaaatg
gagcctcctgttcaatag
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integrated database retrieval system