KEGG   Selaginella moellendorffii: SELMODRAFT_81344
Entry
SELMODRAFT_81344  CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smo  Selaginella moellendorffii
Pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_81344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_81344
Spliceosome [BR:smo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    SELMODRAFT_81344
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz EIF3I WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 PRP4 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_WDR19_1st eIF2A Beta-prop_SPT8 Ge1_WD40 WD40_like PEP5_VPS11_N Nbas_N
Other DBs
NCBI-GeneID: 9654568
NCBI-ProteinID: XP_002964088
JGI: 81344
UniProt: D8QZK5
LinkDB
Position
Unknown
AA seq 525 aa
MAAEVAKTVALADIPTLHSDGAAAVAKKDEYEVSEASKVAREKHEKDMERILLQRRAAAL
AVPTSDAAVKEKLRQMGQPVTLFGEREMERRDRLRYLMADEGGDRLPQKQEAKEESVKIS
AVQKSTFYTEGTADLLRARMEILHFSVPRAADRIARAKRKRENPDEDEEQEIKSVLKSVA
NFSLDCSEIGDDRPLTGCAFSPDSALLATCGWTGVAKIWSVPDVKKVGALKGHHTERLTD
VVFSPDGQNIATASADRTAMVWDLQGNMKMAFKGHLTRLARIAFHPSGAYIGTTSFDKTW
RLWDVNTGAEVLLQEGHSRGLYGIAFQCDGSLVASCGMDALTRVWDLRTGRSIMALEGHV
KPVLGVDFSKNGYHLATGGEDHTCKIWDLRRKAMLYTIPAHSSLISQVKYEREDGYYLMT
ASFDNTAKAWSGRDFKPVKTLSGHEGKLTGVDVTSDNQYVVTVAHDRTIKLWSQKNSPAD
DKEDEEMPDVGEGEQQQHETQELAEMESEKEEQEDDEGEMEPPVQ
NT seq 1578 nt   +upstreamnt  +downstreamnt
atggccgcggaggtcgccaagaccgtggcgctcgcggacatcccgacgctccactcggat
ggcgctgccgcggtagccaagaaggatgagtatgaggtgtccgaggcgagcaaggtcgcg
cgggagaagcatgagaaggacatggagaggatcttgctccagcggcgggcggctgcgctg
gcggtcccgaccagcgatgccgccgtgaaggagaagctgcggcagatgggccagccggtg
acgctgtttggggagcgcgagatggagcgccgggaccggctgcgctacctcatggccgat
gagggtggtgatcggctcccccagaagcaggaggccaaggaggagtccgtcaagatctcg
gctgtccagaagagcaccttctacaccgagggcactgcggacttgctgcgagcgaggatg
gagatcctccacttctccgttcctcgcgccgccgacaggattgctcgagcgaagcggaag
agggagaatccggacgaggacgaggagcaggagatcaagtcggtgctcaaatccgtcgcc
aacttctcgctggattgcagtgagattggcgacgacaggcccttgacgggatgcgcattc
tcgccagactcggcgcttctcgctacgtgtggctggactggtgtcgcaaagatctggagc
gtgcccgacgtgaaaaaagtgggagcgctcaaaggccatcacacggagaggttaacggac
gtcgtcttctctcccgatggacagaacatagcgacagcatctgcggatcggacagccatg
gtctgggaccttcaaggaaacatgaagatggctttcaagggccacttgacgcgcctggcg
aggatcgcgttccatccatcgggagcctacattggaacgaccagcttcgacaaaacttgg
aggctctgggatgtgaacaccggagcggaggtgctgctgcaagagggccacagccggggc
ctgtacggaatcgctttccagtgcgatggctcgctggtggcttcctgcggcatggatgcc
ttgacccgtgtgtgggatcttcgtaccggacggagtatcatggctctggagggtcatgtg
aagccggtgctgggtgtggatttctcgaagaacggctaccacttagcaaccggaggagag
gatcatacgtgcaagatctgggacttgaggaggaaggcaatgctctacaccattccggct
cactcctccctgatttcccaggtgaagtacgagcgcgaagatggatactatctcatgaca
gcttcttttgacaacacggccaaggcatggtcgggacgcgatttcaagcccgtgaagacg
ctatcgggacacgaagggaagctcacaggcgttgatgtaacttctgacaaccagtacgtt
gttacagtggctcacgacaggacaatcaagctgtggtcgcagaagaacagcccagcggat
gacaaagaagatgaagaaatgcctgacgtgggagagggagagcagcagcagcatgagaca
caagaactcgcagaaatggaatcagaaaaggaagaacaagaagatgacgaaggagaaatg
gagcctcctgttcaatag

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