Selaginella moellendorffii: SELMODRAFT_82212
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Entry
SELMODRAFT_82212 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_82212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_82212
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_82212
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SELMODRAFT_82212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
PWI
ABC_tran
SRP54
nSTAND_NTPase5
NAT10_TcmA_helicase
AAA_16
NTP_transf_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9653980
NCBI-ProteinID:
XP_002964197
JGI:
82212
UniProt:
D8R071
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MAGEERALKTWVSDELQEIQGFSEAAVVSFVIGLAKSATSSAVLASRLKENSFPPGQVTD
RLARELFARVPRKKSGLSGYQQAEIEAARYARKQEEYKLVAGDDEGNVAPSPSPAAKKQS
KHGNLRKRGKEEENEDEDVGILSKRGRRTLEEEEEVERERAREKDQREKEELEARLKERD
EASTRKVMEHKISREQEEENKRRLQAQESDEGLKVAREISRQSYLKKRQEKKLEELKDTL
IDEELLFAEVKLTAREKKEKAYKQEVFDLAMKMTKDTNDIVGYQIPEAYDDEISRVKQER
RFAVALERYKDPDPEDRAIPFAEQDAWEDYQSGKAKMKFGAADKKKADEYEFVFEDQVQF
VQADIMSGENEPMDEKESRKAAAQTEHEHILEERKKLPIYPYRQELLDAIEQYQVLVIVG
ETGSGKTTQIPQYLHEAGYTERGKIGCTQPRRVAAMSVAARVAQEMNVKLGHEVGYSIRF
EDCTSEKTKLKYMTDGMLLREFLGEPDLKSYSVMIVDEAHERTVSTDVLFGLMKDITRFR
QDLKVLISSATLDAEKFSKYFDDAPIFTIPGRRYPVDMMFTKAPEADYLDAAVVTVLQIH
ITQPPGGDILVFLTGQEEIEAAEEILKQRTRGLGSRIAELIICPIYANLPSDLQAKIFEP
TPPGARKVVLATNIAETSLTIDGIKYVVDPGFCKQKSFNPRTGMESLIVAPISKAAAMQR
AGRAGRTSPGKCFRLYTQWSFNNEMEDNTVPEIQRTNLGNIVLMLKSLGINDLMNFDFMD
PPPAETLMRALEQLYALGSLNDRGELTKLGRRMAEFPLDPMLSKMIVASDKFKCSEEIIS
IAAMLSVGNAIFYRPKDKQVHADTARMNFHSGNVGDHIALMRVYDSWKETNYSSNWCYEN
YIQVRSMKRARDIRDQLQSLLERVEIELTSNANDLEAIKKTVTAGFFYHTAQIQKNGSYK
TVKNPQVVHIHPSSGLSQVLPRWVVYNELVLTTKEYMRNVIEVKKDWLVEIAPHYYKKQD
VEDVGAGKMPRGKGRAASTA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggccggggaggaaagggcgctcaagacgtgggtgagcgacgagctccaggagatccag
ggcttctccgaggcggccgtggtgtcgttcgtcatcgggcttgcgaaatcggcgacgagc
tccgcggtgctcgcgtcgcggctcaaggagaactcgttcccgcctggccaggtaacggac
aggctcgcccgcgagctcttcgcaagggttcctcgcaagaaatcggggctcagcggctac
cagcaggcggagatcgaggcggcgaggtatgcccgcaagcaggaggagtacaagctcgtg
gctggggacgacgaggggaatgtagcgccatcgccatcgccagcggcgaagaaacaatcc
aagcatggcaatcttcgaaagcgcgggaaggaggaggagaacgaggacgaggacgtgggg
attctgtccaagcgggggcggcggacgctcgaggaggaggaggaggtggagagggagcgg
gccagggagaaggatcagcgggagaaggaggagctggaggccaggctgaaggagagggac
gaggctagcaccagaaaggtgatggagcacaagatttctcgcgagcaagaggaggagaac
aagcggcgcttgcaagcacaggagagtgacgaggggctgaaggtggcgagggagatctct
cgccagtcctacctcaagaagaggcaagagaagaagctagaggagctcaaggacacgctc
atcgacgaggagttgctgttcgcggaggtgaagctgacggcgagggagaagaaggagaag
gcgtacaagcaggaggtgtttgatctggccatgaagatgaccaaggacacgaacgacatc
gtcggataccagattccagaggcctacgacgatgaaatctccagggtcaagcaggagagg
cgcttcgcggtggccctggagcgctacaaggacccggatcctgaggacagggctataccc
tttgccgagcaggacgcttgggaggactaccagagcgggaaagccaagatgaaattcggt
gccgcggacaagaagaaggctgacgagtacgagtttgtgttcgaagaccaagtccagttc
gtccaagccgatatcatgtccggcgagaacgagcccatggatgaaaaggagagcaggaaa
gctgcggcgcaaacggagcacgagcacattcttgaggagagaaagaagctgccaatctat
ccataccggcaggagctactggatgccatagagcagtaccaggttcttgtgatagtggga
gagacggggtcggggaagacgacgcagataccacagtatcttcacgaagccggctacact
gagcgtggaaagatcgggtgcactcagccccggagggtggcggcgatgagtgtggcggct
cgagtggcccaagagatgaatgtgaagctcgggcatgaggtgggctattcgattcggttt
gaagattgcacctcggaaaagactaagctcaagtacatgacagacggtatgctactgcgt
gagtttctgggcgagccggatctcaagagctacagcgtgatgatcgtcgacgaggctcat
gagcggaccgtctcgacggacgtcctctttgggctgatgaaggacatcactcgcttccgg
caagatctcaaggtgctgatctccagtgcgaccttggacgccgagaagttctccaagtac
tttgatgacgccccgatctttaccattccgggaaggcgatatccagtggacatgatgttc
accaaggctccggaggccgactacttggacgctgctgttgtgacggtgctgcagatccac
atcacgcagccccccggcggagacatcctcgtgttcctgacgggtcaggaggagatcgag
gcagcggaggagattttaaagcagagaacgaggggcttggggtccaggatagcggagctg
ataatctgtcccatctacgccaaccttccatccgacttgcaagcaaagatcttcgagccg
accccccctggagcacgaaaggtggtgctcgcgacaaacattgccgagacgtccttgacg
attgacgggatcaagtacgtggtcgaccccggcttttgcaagcagaagagcttcaacccg
aggaccgggatggagtcgctgatcgtggctccaatctccaaggcggcggcgatgcagaga
gccggacgagcagggcggacgtcccccggcaagtgcttccgcctctacacgcagtggtcg
ttcaacaacgagatggaggacaacacggtaccggagatccagcggaccaacttgggcaac
atcgtgctcatgctcaagagcctgggcatcaacgacctcatgaacttcgacttcatggat
cctccccctgcggagacgctgatgagggccctggagcagctgtacgcgctgggctcgctc
aacgatcgcggcgagctgacgaagctggggaggaggatggccgagttcccgctggaccca
atgctgtccaagatgatcgtggcgtcggacaagttcaagtgctccgaggagatcatctcc
atcgccgcgatgctctcggttggcaacgccatcttctaccggccaaaggacaagcaggtc
cacgccgacacggcccgcatgaacttccactccggaaatgttggcgaccacatcgcgctc
atgcgcgtctacgactcgtggaaggagaccaactacagctccaactggtgctacgagaac
tacatccaggtgcgcagcatgaagcgggctcgcgacatccgggaccagctccagtcgctg
ctggagcgggtggagatcgagctgacaagcaacgcaaacgacctggaggcgatcaagaag
acggtgacggcaggcttcttctaccacacggcgcagatccagaagaacggctcgtacaag
acggtgaagaacccgcaggtggtgcacatccatcccagctcgggactctcgcaggtgctg
ccgcggtgggtggtgtacaacgagctggtgctcaccaccaaggagtacatgaggaatgtg
atcgaagtgaagaaggactggctcgtggagatcgcgccgcactactacaagaagcaggac
gtggaagatgttggcgctgggaaaatgccgcgggggaaagggagggccgcgtccacggcc
tag
DBGET
integrated database retrieval system
