KEGG   Selaginella moellendorffii: SELMODRAFT_83551
Entry
SELMODRAFT_83551  CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
smo  Selaginella moellendorffii
Pathway
smo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SELMODRAFT_83551
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_83551
   03036 Chromosome and associated proteins [BR:smo03036]
    SELMODRAFT_83551
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SELMODRAFT_83551
Chromosome and associated proteins [BR:smo03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     SELMODRAFT_83551
    COMPASS/SET1 complex (yeast)
     SELMODRAFT_83551
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 WD40_RFWD3 PQQ_3 Beta-prop_WDR19_1st Beta-prop_Nup120_160 PQQ_2 Beta-prop_WDR35_TULP_N Nucleoporin_N MIOS_WD40 Beta-prop_DCAF4 Frtz
Other DBs
NCBI-GeneID: 9633953
NCBI-ProteinID: XP_002965021
JGI: 83551
UniProt: D8R1A8
LinkDB
Position
Unknown
AA seq 328 aa
MEITDELVGTMFAGAVFKDCGGKINSLDFNPSEDLLVTACDDESIRLYDTANAKLTKTTQ
SKKYGVDQICFTHSSHSVVCSSKNGWDGKFSLRYLDLSKNTYLRYFKGHRDRVVCLCVNP
KSQILMSASLDNTVRIWDLRSNVCHGLIRVHGRPSVAYDHSGVVFGVSMDGGAIKLFDAR
IFEKGPFDTFYIQDSTAEVSGMKFSSDGKLMLASTTDSNVYVLDAFNGKQLHVHKLEPCP
DGGTLEASFSPDGQVIISGSGNGTLHAWNAVTGAEIATWTSSDGVPSVVKWDPRHLMFAS
AASVLTFWIPDVTKLNTPRQSHNQYNYY
NT seq 987 nt   +upstreamnt  +downstreamnt
atggagatcacggacgagctcgtcggcaccatgttcgctggagcagtcttcaaagattgt
ggagggaagattaattccctggattttaatccttccgaggatctgcttgtcacggcttgc
gacgacgaatccattcgtctctacgacactgcaaatgccaagctcacaaagacgactcaa
agcaaaaaatatggcgtggaccaaatttgcttcacgcattcttcccattcggtcgtgtgt
tcttccaagaatggatgggatggtaagttttccctgagatatctggatttgagcaagaac
acttacctacgttatttcaaggggcatcgagatagagttgtttgcttatgcgtaaatccc
aagagccaaattcttatgtcggcttctctagacaacaccgttagaatatgggacctccga
tcaaacgtttgtcatggattgattcgcgtgcatggaagaccatccgtagcttacgatcac
agtggagttgtttttggagtgagcatggacgggggtgccatcaaactctttgacgctcga
attttcgaaaaggggccgtttgatacgttttatatacaagactccacagccgaggtctcg
ggcatgaagtttagcagcgacggcaagctcatgctagcttcgaccacggatagcaatgtt
tatgtgctagacgctttcaatggcaaacagcttcatgtccacaagctggagccttgtccg
gacggaggaactttggaagcttcgttcagtcccgatggtcaagtgataatatctggttct
ggaaatggcactcttcatgcatggaatgctgtcacgggtgctgagattgctacctggaca
agtagcgacggtgttccttccgtcgtgaaatgggatccacgacacttaatgtttgccagt
gctgcaagcgtacttacgttttggatcccagatgtaaccaagctcaatacgcctagacaa
tcacataatcagtacaactattactaa

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