Selaginella moellendorffii: SELMODRAFT_84661
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Entry
SELMODRAFT_84661 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_84661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_84661
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
SELMODRAFT_84661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
9634971
NCBI-ProteinID:
XP_002966064
JGI:
84661
UniProt:
D8R4J7
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MEEDELRRQAQAIEACIAPLQVAIKDVELLSRRIPAAEDFHYYSNFSNFRGPVASMNARA
QALLSEIGTCKKLRSEASAWPADVEESYDWLVGVQDDVLEGVGSALDELGLGAGKRPPDF
LLRKGKKKNAPFASGNASESKSSTTSQRAVKVASQKKERLPVPFHVRSLPRPQDKFDYPA
DNSNSPFKHLSREEELTSMEYMKEFPADGPDEPVKPKSLSETPLFIVESLPALETMAAKL
RASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRK
VIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRMERFGLAFLLQTFCEVTPDKRYQLAD
WRLRPLSAEMLKYAREDTHYLLYVYDKMKGLLRDAETTEDLYLEVCQRSRDLCLQLYEKE
LFTESSFLHIYGLAEKNLTPEKLAIVAGLYAWRDKLCRSEDESTGYILPNSLLFRLAEDA
PQDVKRLQGILRRGHPVAAFHSAALLKVIRDA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggacgagctgcggcgccaagcccaggcgatcgaggcctgcattgcgccgctc
caggtcgcgatcaaggatgtggagctcctgtcgcggaggattcccgcggccgaggatttc
cactactactccaatttctcgaatttccgggggcccgtggcgagcatgaatgcgcgcgcc
caggcgctgctctccgagatcggtacgtgcaagaagcttagatccgaggcatcggcgtgg
ccggcggatgtggaggaatcatacgactggcttgttggtgtccaagacgatgttctggaa
ggcgttggatcggctctggatgaattgggcctgggagctgggaagagaccgccggatttt
cttctccgcaagggcaagaaaaagaacgctccttttgcgagcggcaatgcgagcgagagt
aaatcctccaccacgtcgcagagagctgtgaaagtggcttctcagaagaaggagcggctt
ccagttccttttcatgtcaggtctcttcctcgcccacaggacaagttcgactacccggct
gataactccaactcgcctttcaagcatctgtctagagaggaggagctgacaagtatggag
tatatgaaggagtttcctgctgatggacctgatgagcctgtgaaaccaaagtctttgagt
gagacgccattgtttatcgtggaaagccttccggctttagagacgatggctgcgaagctg
cgtgcgagttccgaaatcgcggtggacctggaaaatcatcactatcggtcttttcaaggc
tttgtatgcttaatgcaagtctctacgcgttcccaagactttattgtggataccttggtt
ctcagaagccatattggcccagtcttgagaagtgtcttcgcaaatccttctatccgaaag
gtcatacatggatcagaccgtgatattctgtggcttcaacgggattttggcatttacgtg
tgtaacttgttcgacactggtcaggccgcgagagtgttgcggatggagagatttggattg
gcttttttactgcagacattttgtgaagttactcctgataagcggtatcagcttgccgat
tggagacttcgtccactcagtgctgaaatgttaaagtatgcgagagaggacacacattac
ttgctgtacgtttatgacaagatgaaggggctgcttcgagacgcagaaactactgaggac
ctttatctggaggtctgtcaacggagccgcgacctttgcttacaattgtatgagaaggaa
ctcttcactgaaagctcgtttttgcatatttatgggctagccgaaaagaacttgacccct
gagaaacttgcgatagttgctggattgtacgcttggagggacaaactttgtcgaagcgaa
gacgaaagcactggatacattctacctaatagtctactgttccgtcttgctgaggatgct
cctcaagatgtgaaaaggctacaaggaattttaaggcgtgggcaccctgttgcggccttt
cactcagctgctcttctgaaagtgattcgagacgcg
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