Selaginella moellendorffii: SELMODRAFT_88215
Help
Entry
SELMODRAFT_88215 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_88215
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smo01001
]
SELMODRAFT_88215
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_88215
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
SELMODRAFT_88215
Protein kinases [BR:
smo01001
]
Serine/threonine kinases: Other
PIKK family [OT]
SELMODRAFT_88215
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
SELMODRAFT_88215
mRNA cycle factors
Common to processing body (P body) and stress granule
SELMODRAFT_88215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
HEAT_ATR
FRB_dom
BDI_1685-like_C
OmdA
Motif
Other DBs
NCBI-GeneID:
9630896
NCBI-ProteinID:
XP_002967866
JGI:
88215
UniProt:
D8R9U2
LinkDB
All DBs
Position
Unknown
AA seq
2922 aa
AA seq
DB search
MLLQTLASQVRAAHTFDDHGGGGGAAVTAAALPPPPLLPSVQVCTLLKMNLQMLAAQGLA
LHPSAALRLLETGSPFSNLRLHPCQAITSSVAATYVYFLQHGCEKVAVESALCLKREIET
LSRSLAGKKGAMGLVEAEVVSLLKFDLLLLLMSVRANAAESQVQKVKSIINFVLEKSDPF
EAPVRWHSELQLAVVQALRRVFSWIVPWEVDAEGAMEFFGKCSVAMARGLEKGVASLTVR
IEVLEWVGEFPKWFRKLEGMTLLSSSLFVALVAAASDEEHTVRLQASKTFGALLRHKCLS
SSQLYSVASAAFEQLGDPDPGIQAAFREVLATCALGALWVHGWNSDLDAKEEGNFVTKRP
LEREKHWRSVLSANRFALQLSPPQVVCILNYISQRPQSLPAGWQQRLVFNCLKTKSADDK
KQGDGLDRKEDFSVVEDAARFDLVESWCCSSNMAAAWFIIQELARHCITVRFRTHLGGPT
QTFAALERMLLDLPQLVQSESSAANTSELLPMRLLLELVDSLQRNIYNAYEGSLVLEAPS
FSSGLFFRANKKVCEEWFARIREALVNASSVIQCHFGTAQHALFRLHDLRPMALAALRDL
PRSQAADGGLSLKVKLQQDVFRVLRHGSLALCKLHESDSILGLQAWAVTAFAGLILEDVH
KVSSPLGPVGWMNGLAFEARGEFERAAAHYSQLFQSEETLSVLGADGVQFIIGRIVESYV
SLSDWEALEGWLQELQVLRAKHAGKSYTGALTTAGIDMNSIHALSRFDASDMEGTWGYLD
LTPQSNNEITIDPRQALQRSEQMLLQAMLRKDSEVEDAAREVKLARAMLDGPLLVSSLDD
LSDAAPYLTQLHCIEVVESWKGPSERQEGIQDISLKYFNHPADEVYQDCHLWLKVLRVYK
TVFPHAGVTSTLRRQLIRLARKHGNFRLARRMLKEMDGENWDSKVAAYENSLLHFSEGQH
AKAMTELWPLVKNFIAESERALPFEGDVMAATSCLKLGSWLQKRRTENDFAGLLSEMDLT
SGSGGMILEEVAGAAVKAATLHCPSFGKAWFSYASWCYSLARCGFFGNETLSKASIFPQV
LEKELISSSPSLTDEEMMKIQAMIKSLGSELEDAILEMLVKRVVFLLEAAAREAGFEKWD
GESLSLQLRQELQVLKPSSVPGLINELLQVWWGVRKRRISLFGYAAHGFLKYMSLSNRTT
VRSNPLKQDSTLSASLFVLNILQTCGVELEDILQQGLSSIPPSPWKEITPQLFACVSSHP
EAKVRKQLEGLLMSLANVYPWAIVYPTLVHFNASEGQSSEELERILNSLSKLHPKVVNDV
RLMIAELGSITFLWEEQWLTTLQDLHADVTRRIITLKEEAARIAENQTLSPDEKTKINAA
KYAAIMAPVSYALERRLTLTSRPAETPHEVWFQEHFGGQLRAAITTFKTPPGGNITLNDV
WKPFDAIAASLSNHHKRSAVVLQDVSPRLAALTHSDAPMPGLEFPDADLVTVANFNDQIT
ILATKTKPKKVSVTGSDGQVYNYLLKGREDLRLDARIMQLLRASNKMLRASSATRREGLA
VKCYSVTPISGRAGLIQWVDNVTSLYSVYKAWQLRQQAAQLSSNAVSGAPPPLPRPSDMF
YGKIIPALKEKGLRKVISRRDWPQDVKRKVLLDLMKETPRQLLYRELWCASDGLKGLNKK
IKRFSGSVAVMSVIGHVLGLGDRHLDNILIDFSSGDVVHIDYNICFEKGRRLKVPEIVPF
RLTQTIQNALGPTGVEGFFRASCEAVLSVLQKNKEVILMLLEAFVWDPLVEWMRGDGHDE
ATIGGEERKGMELAVSLSLFASHVQENRVALQEHHDQLLRTLPTIPSTLQSWAAGYENFE
RCSTLAYHINQKKYAAENAEVAARNLLAEASGSLEKTHVTYEIQAREFAQSKARTAEAAR
ETTQWIEQRSRVLDSLRTDTAPELQALGQRTHSTEAVSLLQAIVASGVALTVLPEPTQVH
FREVDRDISQFTSARHEALLHARATLQAYAVALQRLLPGNYYTTSYVHSWAKILQLLSMQ
VTPEVLGVTKRQAIDITAGGRGDHDDVICQKHEKLRSHVELLGEEVQKLEQGRLQLEESV
DPDAEKRAKDKLMGIFLRSLQQGKKDEDDAGLYDFEERRLKVILVLQSAASTIYSEIGNH
AANLQGVGMEESIRRWCFPELEGLVERAVLVSDVLNELQQFSGKATGYRANPWDSNSSFT
AELKGFTDCLAGIDHLVKQMIGVVLPEAVKAALSQDPAVMDAFASLSQIRGAIDTTLEKV
AEIEMQKSALLELERTYPDRLEELVKRKTFLEEAAAGGKDDLSWEEAEELASQEDLCREQ
LETLQKAWSQRSAQASAVLRMEGLVRSALASADQRFEALVALDRDDLHLMRGKVLLAAFA
KLFSGLESLDAALRRVPVAKTMQKTFFVWKVYVMDILLDSCVRDASNDLSLSLDQVISQH
KRRLEAQLQGVLDLYLRERVSPAFLDIILKEATISSFADNSDSSREGEAAKKAVKLLREY
CDVHETVRAAKSAAFALKIQADEAKQSLQNAQIEIAQMEWLHETVLLPRVQFVAMPSGPY
PEKSTSIRWWSRKQILDNIRNSIAAISRATEGLQKAERASVSAEEQLERTMAWASNRAGT
SQEFRERLQRRQQLLWTGQEHATSTVRLCVTVLEFEASREGYLESSSSSSSSDGKSWQQS
YQSLILRLEAAYIAFTSCDMEWKAAQKALEAASANLSGVLRERQLVSSESESSGDHCAAE
LQSIFLQLRQLTLEAAGAVNAFCKVVRSHSALTSEGAVMLDEARADGVSDVHSLAKEAIT
ERQSLISDLKKVHAAVAPLELLLSSTANAMSADLDVKAVIKSGQSPTLQSLDLKIKESLA
DLPLHVSSVLDAAQKLHSALTSLGRTASVDAGTLNKASPNVS
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccagacgctcgcctcgcaggtgagggccgcgcacacattcgatgatcacggc
ggcggcggcggtgcggcggtgactgctgctgctctgccgccgccgccgctcctcccatcg
gtccaggtatgcacgctgctcaagatgaatctccagatgctcgcggcgcaggggctggca
ttgcatccctcggctgcattgcggctgctggagacaggatcgccgttctcgaatcttcgc
ctccacccctgtcaggcgatcacaagctccgtggcggcgacctatgtgtatttcctccag
cacgggtgcgagaaggtcgctgtggagtcggcgctgtgcctgaaaagggagatagaaact
ttgagcaggagcttggcggggaagaagggggcgatggggcttgtggaagccgaggtggtt
tcccttctcaagtttgatctcttgctcctgctgatgagcgtgagagcaaatgccgcggag
tcacaggtccagaaggtgaaaagcatcatcaacttcgttctcgagaagtctgatcctttt
gaagctcccgttcgctggcactcggagctccagttagcggtggtccaggccttgcggaga
gttttctcctggatagttccttgggaggttgatgccgagggagccatggagttcttcggg
aaatgcagtgtggctatggctcgtggcttggagaaaggggtggcgagcttaaccgtgagg
atagaggtgctggaatgggtcggcgagtttccaaagtggtttaggaagctggaaggtatg
actcttctcagcagcagcttgttcgtggctttagtggctgctgcttccgacgaggagcac
acagtgaggctgcaagcttctaagactttcggtgctcttcttcgccacaagtgcttgagc
tcttctcagctttactccgtggcgagtgcggcgttcgagcagcttggggatcccgacccg
ggcatccaagctgcgtttcgcgaagtcctcgcgacgtgcgccttgggtgcgctgtgggtg
cacggatggaactcggatttagatgcgaaggaagaggggaacttcgttactaagaggccg
cttgaacgtgaaaaacactggagatcggttctatcagcgaaccgtttcgcgctacaattg
agcccgccacaggtggtttgcatcctgaattatatatctcagcgtccacagagcttgcca
gcggggtggcagcagcgtctggttttcaactgcttgaagaccaaaagtgccgacgacaag
aagcagggtgatggactggatagaaaggaagattttagtgttgtggaggacgctgcccgt
tttgatctggtggagagctggtgctgtagtagcaacatggctgctgcttggttcattatc
caggagctagctcgtcactgcatcactgtgaggtttcgtactcaccttggaggaccaacg
cagacattcgcagctctcgagcgaatgctgctggatcttccccagcttgtacagtcggaa
tcgtcagcagccaacacgtcagagctgctaccaatgagactccttttggagctggttgat
agcttacagaggaacatctataacgcctacgaaggctcactagttttggaggccccgtcc
ttctccagcggcctcttcttccgtgccaacaagaaggtttgcgaggaatggtttgccaga
atccgggaagccttggtgaacgctagcagcgtgatacagtgtcactttgggacggcccag
cacgctctctttcggctgcatgacttgaggccgatggcactagctgcgctgcgggacttg
ccgcgtagtcaagctgctgacggcggcctgagcttgaaggtgaagctccaacaggacgtt
ttccgtgtgcttcgtcatggatctctagcactatgcaagctgcacgagagcgactccata
cttggacttcaagcgtgggcagtgacggcgttcgctgggttgatccttgaggacgttcac
aaagttagctctccgctggggccggtcgggtggatgaacggattggcttttgaggcgaga
ggagagtttgagagagctgcagcacattactcgcagctcttccagtccgaagaaacttta
tctgttctaggcgcggacggagtgcagtttatcatcggcaggattgtggaaagctacgtc
tcgctctcggactgggaagctctagaaggctggctccaggagctgcaggttttgcgtgca
aagcatgcaggaaagtcgtacacgggagccctgacgactgccggtatcgacatgaactcg
atacacgcactgtcccgtttcgacgcttctgacatggaagggacttggggatatttggac
ttgacacctcagagcaacaacgagattactatcgatcctcgtcaggcactccagagaagc
gagcagatgctgttacaggccatgctgaggaaggatagtgaagtagaagatgccgctcgg
gaggtgaagcttgctagagctatgctggacggaccgttgctggtatcttcgctcgacgac
ctcagtgacgctgctccgtatttgacacagcttcactgcattgaagtcgtggagtcttgg
aaggggccgtctgaacgccaggaagggatacaggatatctcgctgaagtatttcaaccat
cctgcggacgaagtgtaccaagactgccacttatggttgaaggtgttacgtgtttacaag
acggtctttcctcacgcgggcgtcacttcgacgttgcgacggcagttaatccgattggcg
agaaagcatggcaacttccgacttgctcggaggatgctgaaagaaatggatggcgagaac
tgggattcaaaggtagcggcttacgagaactccttgcttcacttttccgagggccagcat
gcaaaagccatgacggagctgtggccgctggttaagaacttcattgccgaaagcgaacgg
gcacttccattcgaaggtgatgttatggctgcaacgtcgtgcttaaaacttggttcctgg
ctacaaaagaggcgaacggagaatgattttgccgggttgctgtcggagatggacctgacc
agtggatctggtggcatgattttggaggaagtcgctggcgcagcagtgaaagcggcaacg
ctccattgtccgtcttttggaaaggcctggttttcttatgcttcctggtgctactcactc
gcaaggtgcggttttttcggcaatgagacgctgtcaaaggctagcatctttccgcaagta
ctggagaaagagctgatttcaagttcaccttccttaacagacgaggaaatgatgaaaatt
caggcgatgataaaatctcttggtagtgaactagaggacgccatcttggaaatgctggtg
aagcgggtagtatttttgctggaagcggcagcaagggaagcaggctttgaaaaatgggat
ggagagtctctcagtttgcagctgcgccaggaactacaggttctcaagccgagcagcgtc
ccgggccttataaatgagctcctacaagtttggtggggtgttcgaaagagaagaatatcc
ctgtttgggtacgctgctcacgggtttctgaagtacatgagcttgtcgaatcgaaccacc
gtgagatccaacccgctgaaacaagactcgacgctgagcgcttcgttgtttgtgctaaat
atccttcagacttgtggagtggagcttgaagatatacttcagcagggactgtcctctata
ccgccatctccatggaaggaaatcacgcctcaactttttgcatgcgtaagcagtcatcca
gaggctaaagtgaggaagcagctcgagggactgctaatgagccttgcgaacgtgtatccg
tgggctatagtttatccgacacttgtacattttaatgcctcagagggccaatcgtccgag
gagttggaacgcatcttgaactctctgtcaaagttgcatccgaaagtagtgaatgacgtg
cggttgatgatagctgagctcggatcaataacgtttctttgggaggagcaatggctgact
acgcttcaggatcttcatgcagatgtgactcgtcgaatcatcactttgaaagaagaggct
gcaagaatagctgaaaatcagactcttagccccgacgagaagacaaagataaacgcagca
aagtatgcagcaatcatggctccagtatcgtatgcattggagcgacgactcactcttaca
tcgagaccagcagaaacgccacatgaagtctggttccaagaacactttggtggccaactc
agagctgcaatcacaacgtttaagacgcctccgggtggaaacattactctaaatgacgtc
tggaagccatttgacgccatcgcagcatccttatcaaatcatcacaaaaggtcggccgtg
gttttgcaagacgtatctccacgcctcgctgccttgacgcactcagatgcgccaatgcca
ggccttgagttcccagatgcggacttagtaacggtggcaaacttcaacgaccagattact
atcctggcaacgaaaacaaagccaaagaaggtctctgtgacgggatcagatggtcaagtt
tacaactatctgctcaaaggaagggaggaccttaggctggatgcgaggatcatgcagcta
cttcgcgcttcaaacaagatgctacgggcgtctagtgctacgagacgtgaaggcttggct
gtgaagtgctactccgtgacgccgataagtggtcgtgccggcttaattcagtgggttgac
aatgtgacgagcctgtactcggtttacaaggcttggcagcttcggcaacaggcagcacag
ctctcatcgaatgctgtctcaggtgctcctccacctctgccacgccccagcgacatgttc
tacgggaagatcattccagctttgaaagagaagggactgcgaaaagtcatatcccggaga
gactggccacaggatgtcaaaaggaaagtcttgctggatcttatgaaagagacaccgagg
cagctactataccgagagctttggtgcgcaagcgatggattaaaaggattgaacaaaaaa
attaagagattctccggcagcgttgcggttatgagtgtgattggacacgttcttggctta
ggcgatcgtcacctagacaacatcctaattgattttagctccggagacgtggtgcatatc
gactacaatatctgttttgaaaagggtcggaggctgaaagttcccgagatcgttccattt
cgactgacacagactatccagaatgcgcttgggcctactggtgtggaaggcttctttcga
gctagctgcgaagctgttctgagcgttctacagaagaacaaagaagtgatacttatgctg
ctggaggcatttgtatgggatcctttggtggaatggatgaggggagatggtcacgatgag
gccacgattggaggtgaagaacgtaaaggcatggaacttgctgtgagcctcagcttattt
gcttcgcacgttcaggagaatcgtgttgcacttcaggaacaccatgatcagctactgcgg
acactccccacaatcccctctactcttcagagctgggcggctggatacgaaaactttgaa
agatgctcgactcttgcctaccatataaaccagaaaaaatatgctgctgagaacgcggag
gtcgctgctaggaaccttttagctgaagcctctggttctctagagaagacacacgtgaca
tacgagatacaggctcgcgagttcgcccagtccaaagcacgtactgcagaggcagctaga
gaaaccacacagtggattgagcagcgcagcagagttctcgattctctccgaacggacaca
gctccagaactccaggcactgggacaacggactcattcgacagaggctgtttccttgcta
caagcaatagttgcgtccggagtagctttgacagtcctacccgagccgacacaagtccac
ttcagagaggttgacagggacatttcgcagttcacatcagcgcggcacgaagctttgctg
catgcccgagcaactctgcaagcctatgctgtagcgttgcagaggcttctgccagggaac
tattatacaacgagctacgtacatagctgggcgaagatactccagttgctaagcatgcaa
gtcactccggaggtgctgggcgtgaccaaacggcaagcaatagacattactgcgggagga
cgtggagatcacgacgatgttatctgccagaaacacgagaaactgaggtcacacgttgag
cttctcggcgaagaagtccagaagctagagcagggacgtctacaacttgaagaatcagtg
gatccggatgcggagaaaagagccaaggacaaactcatggggatttttcttcgtagcctc
cagcagggaaagaaagatgaggatgacgcgggtttatacgatttcgaggaaaggcggctc
aaagttattttggttcttcagtctgctgcatcaactatttacagtgagattgggaatcat
gcggctaatcttcaaggtgttggaatggaggagtccatacgaaggtggtgctttccagag
ctcgagggactagttgagagggctgtcctcgtctcggacgtattgaacgagcttcaacag
ttcagtgggaaggctactggatatcgtgcgaatccgtgggactcaaactcgagttttact
gcagagttgaagggatttacagactgtcttgctggtattgatcacctcgtgaagcagatg
ataggcgtggtgcttccagaggctgtcaaggctgctctttcacaggatccagccgtcatg
gacgcgttcgcatctttatcccagatacgaggagctattgacacaactcttgagaaggtg
gcggagatagagatgcagaagtcggctttgttagaactcgagagaacttatcctgacagg
ctggaagagcttgtgaagcggaaaacattcctggaagaggcagctgctggtggcaaggat
gatctttcctgggaagaggctgaggagcttgcaagtcaggaagacctctgccgagagcaa
ctggagacgttgcaaaaggcttggtctcaacgcagtgcacaggcttcagctgtgttaaga
atggaaggactcgtgcgatcagccttagcgtccgcagaccaacgtttcgaggcactagta
gcactggacagggatgatcttcacttgatgaggggaaaggttctcttggcagcttttgcg
aagctgttctctgggcttgagtcgctggatgccgctctgagaagagttccagttgcgaag
acaatgcagaagactttcttcgtgtggaaggtctacgtgatggacattctactggactca
tgcgttcgtgacgcttccaacgatttgagcttgagtttggatcaagttataagccagcac
aaaaggcgactagaggctcaacttcagggcgtgctggacttatatctgagagaacgcgtc
tcgccagcctttctggacattattttgaaggaggctaccatctcgagttttgctgacaat
tccgacagttctagagagggggaggctgcaaagaaagctgtgaagctacttcgagaatac
tgtgatgtccacgaaacagtccgagcggcaaagtctgcagcatttgctctgaagatacag
gcggacgaagcaaaacagagcctccaaaatgctcagatcgagattgctcagatggagtgg
cttcatgagaccgttttgctacctcgcgtccagttcgttgccatgccatctgggccttat
cctgagaagtcgacgagcattcggtggtggagtagaaagcagatattggacaacatacga
aactcgatagctgctatctcgagagctactgagggcttgcagaaagcggagcgggcaagt
gtgtccgctgaagagcagctagaaaggacgatggcatgggcttctaatcgtgcaggtact
tctcaggaattccgtgaacgtcttcaaagaaggcagcaacttctctggactggtcaagag
cacgccacgagtaccgtgagactttgtgttacagttttggagtttgaagcttctcgcgaa
ggctacctggagtcaagctcgagtagctcatctagcgacgggaaatcctggcagcagtct
taccagagcttgatcttgcggctggaggctgcctacattgcgtttactagttgtgacatg
gaatggaaagccgctcaaaaagcgttggaagccgcgagtgccaatctatctggtgtacta
agagagcgccaacttgtatctagcgaatccgagtcgagtggagatcactgtgcagctgaa
ctacaatcgatattcttacaactaagacaactcactcttgaagctgccggggctgtgaat
gcattttgcaaggttgtgcgaagtcattcagctcttacctccgaaggtgccgtcatgctt
gatgaggcaagagcggatggagtgagtgatgtgcattccctcgcgaaagaagctatcaca
gaaaggcagagcctaataagtgatcttaagaaggtgcatgctgctgtggcacctttggag
ttgttgctttcatcaacagcaaacgccatgagcgccgacctggatgtcaaggcggtcatc
aagtcggggcaatcgcctacgttgcaatctttggatttaaagatcaaggagtctctcgca
gatttgcctctgcacgtctccagcgttctcgatgccgcacaaaagctgcactcggctctt
actagcttggggcgtactgcaagtgtagacgccggtactcttaacaaggcaagtccaaac
gtttcttaa
DBGET
integrated database retrieval system
