Selaginella moellendorffii: SELMODRAFT_98495
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Entry
SELMODRAFT_98495 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_98495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_98495
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_98495
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_98495
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_98495
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_98495
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
Sas-6_helical
AAA_19
T2SSE
ATPase
ABC_tran
CNDH2_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
9637004
NCBI-ProteinID:
XP_002972679
JGI:
98495
UniProt:
D8RNP0
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
SHAYNRGRNTVLVISKAPLPNYRADLDEKHGQSQRKISISADTETHVESMLAKSIGKISV
VKDCAGTSSHGDDSTLDERRKGCSSFVLELGSHLVKFSSLQAGPAAKSMTSFRKKLPAFK
MKDEILQAVSQNQVLVVSGETGCGKTTQLPQFILEEEINAGRGAACDIICTQPRRISAIS
VATRVADERGDELGESVGYQIRLEARRSQETRLLFCTTGVLLRRLVQDPLLEGVSHVIVD
EIHERGMNEDFLLVVLRDLLPKRPKLRLILMSATINADMFSKYFGNAPKLHIPGFTFPVR
EFFLEDVVESTGFQSQNNQASSRFSGGRRIEKQKDSLTELFEVEAAIQHICEEKDDGAIL
VFLTGWDDISKLLDKLKLNPSVRNELLLPLHGSMPTINQRQIFQRPPPGVRKIVLATNIA
ETSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISRAAAHQRRGRAGRVQPGICFHL
YPKLMYDAMAQYQLPEILRTPLESLCLQIKSLQVGSIAKFLSKALEPPELRAVDNAIESL
KTIGALDDREELTSLGRHLTTLPLDPKVGKMLLMGAIFQCLDPALTIAAALAHRDPFVIP
IDKRDAADEAKRRLAGNARSDHLALMRAYEGYIVAKRHGRERNYCWENFLSAQTLQWMDG
AREQFYDHLSKIGFVDNSSNSANYAAYNKHSDDLEMVRAVLCAGLYPNVVQCKARGRRTA
FFTKDDGKVEPHPASVNSRVGQFAQPWLVYSEKVKTTGIYLRDTTNISDYALLMFGGPLV
SNGKGVEMLDGYLQFTASAKTMELVNALRSQLDDLLTRKIKDPRFDIHREGKHVVSAVLA
LLHCEEKQYY
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
agtcatgcatataaccgaggccggaacacggtgctggttatcagcaaagctcctctgccc
aactatcgagctgatcttgacgagaagcatggacagtcgcagcgtaagatcagtatctca
gctgacacagagacgcatgttgagtccatgctagcgaaatcaattggaaaaatctcggtg
gtgaaagactgcgctggaacatcttcacacggtgacgacagtactttggatgaacgtcgg
aaaggctgttcgagttttgttcttgaattgggttctcatcttgtgaaattttcgtcttta
caggccggtccggcagcaaagtcaatgacatctttcagaaagaagcttcctgcttttaaa
atgaaagatgagatcctgcaagcggtttctcaaaatcaggtgctagtagtctccggagaa
acaggatgcgggaaaaccacgcagttgccacagtttattctcgaagaagagataaatgca
gggcgaggcgcggcttgtgacataatttgtacacaacctcgaagaatttccgccatatca
gttgctactcgcgttgctgatgaaaggggagacgagcttggtgaaagtgttggctatcaa
atccgactggaggccaggcgttcgcaagagacgaggctactcttttgcacgactggtgtg
cttttgagacgtctggttcaagatccgctgctagagggcgtcagtcatgtgatagtcgat
gaaatacacgagcgtggaatgaacgaagacttcctgctggttgttctacgagaccttcta
ccgaagaggcctaagctacgtctcattctcatgagcgcaactatcaatgccgatatgttc
tccaaatattttggcaatgcaccgaagctgcacattccgggttttacctttcccgttcga
gaatttttcctggaagatgttgtggaaagtactggattccaatcacaaaataaccaagca
agttctcggttttctggaggaagacgaattgagaaacaaaaggattctctgactgaactt
tttgaggtggaggcagcaattcaacacatatgcgaagagaaggacgatggtgctattctg
gtattcttaacaggttgggatgacatttccaagcttttggacaagctgaaactcaatcca
tccgtaagaaatgaactgctgcttcctctgcatggatccatgcctacaattaatcaaagg
caaatatttcaacgccctccacctggtgtaagaaaaattgtcttagcgacgaatattgca
gaaactagcataactattgatgacgttgtgtatgttatcgactgtgggaaagctaaggaa
actagctatgatgctcttaacaagctggcgtgccttcttccatcctggatatccagggct
gctgctcatcagagaagaggacgagccggaagggtgcaacctggaatttgttttcatctc
tacccgaagctgatgtacgatgctatggcacagtatcagcttccagaaatcctgcgaaca
cccctggaatctctttgtctgcagataaagagcctacaggtcggaagtatagcgaagttc
ttatctaaagctctggagcctccagagctccgtgctgtggataatgctattgagtcttta
aagacgatcggtgccttggacgatcgtgaggagctgacgtctcttggtcgacaccttaca
acattgccgttagatccaaaggttggcaaaatgctgctgatgggagccatatttcagtgt
ctagatccagcgctaacgattgcggcagccttggctcaccgggatccttttgttattccg
atcgataagagagatgctgctgacgaagcgaaacgaaggctcgcaggaaacgcgagaagt
gaccacttagctctaatgagggcatatgaaggttatatagttgccaagcgacatggacgc
gaacgcaattattgctgggagaattttttatctgcacagactctacaatggatggacggt
gcgagagaacagttttacgaccatctttctaagattggcttcgtcgataactcatcaaac
tcagcaaactatgcggcttacaacaagcacagtgacgatctggaaatggttcgtgcggtt
ttgtgcgctggtttatacccgaacgtcgtgcaatgcaaggcaaggggaagacgaacagcg
tttttcacaaaggacgatggcaaagtcgagcctcatccggcctctgtcaacagtcgagtc
ggccagtttgcacagccatggctcgtctacagtgagaaggtgaagacaaccgggatctac
cttcgggacaccaccaacatttccgactatgctcttctcatgtttggagggccgctcgtc
tcaaacggcaaaggtgtggagatgctcgatggctatctacaattcacagcgtctgccaag
accatggagcttgtaaatgcattgcggtcgcagctagatgacttgctcacgagaaaaatc
aaggatccaagatttgatatacatagagaagggaaacatgtggtaagcgcagttttggca
ttgttgcattgcgaggagaagcaatattattag
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integrated database retrieval system
