Selaginella moellendorffii: SemoP_p005
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Entry
SemoP_p005 CDS
T01496
Symbol
rpoB
Name
(RefSeq) RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SemoP_p005 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SemoP_p005 (rpoB)
03400 DNA repair and recombination proteins [BR:
smo03400
]
SemoP_p005 (rpoB)
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SemoP_p005 (rpoB)
Transcription machinery [BR:
smo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SemoP_p005 (rpoB)
DNA repair and recombination proteins [BR:
smo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SemoP_p005 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-GeneID:
8302263
NCBI-ProteinID:
YP_003097476
UniProt:
C7B2E3
LinkDB
All DBs
Position
PT
AA seq
1077 aa
AA seq
DB search
TVLETNQDMFVMPDPGEARSEAFYRFINWGSMEEPNDSPGIEDTDREMGPRPFGGRYYVI
EPLSDKRDAVYEPIAYPSESYVPVQSTRKGEAWAEEQIVYTGSTPSTSPQGTLVVNGIDR
VTINQISRSPGTHHKMERGPNGNPVYTGTTIPNRGGKPKLEPDGKNRIWVRVRKKRKTPI
QPPSLAMGPSTKDILDNVCYPDNYWEKKDNNVWSREHAVPESHKLSYGTDEYTELSDIFE
ESRQKSPQPRFETGEIGRTNSNKKPDPEVPKNEIFLLPKDVLAATDYLIGIGIGIGTLDD
IDHLKNRRIRTVADLLQDQLRLALERLADSMRGGVSRAARRKNVPTMRSVVNSSLLLTTL
KEFFGSHPLSQSLDQTNPLTQMVHKRKLSSLGPGGPTRRTASYQVRDIHPSHYGRARPIE
TSEGTNAGLISSLALHAGVNHWGYLTSPFHRISGVLSGGGEVAAYVSAEDEGYRITTGTC
SYVYRKDRGEQATAARYRQEFVTLAWDQIHLRSISPLQNFSVGASLIPFLENNDANRTLT
GSNTQRQAAPLLRTEQRIVGTGLEGQIASDPWDTAIAVRGGKIDYIDCERTTSVDDGETI
ETESVMYQSPNNNTRVHQKPAGRFGKGGFPMKGQIAADTGAAKGGELASGRNISMAYMPW
EGYNSEDSVPTSERPTFEGIYTSIHIEKYEMEARVTLQGTAEIITRKIPHSDDYFPRHSD
ESGPVSPGSRVETGDVLVGKPTPRNPEESPKAPESNSPQAIPGIDVTTARETCPKVPTGG
RGRIIDVRWIYPEDTSRYKTRVVHVYVLQVREMQVGDKAAGRHGNKGIIPKIAPRQDMPY
LQDGTSIDMIPSPLGVPPRMNVGQISERVPGPAGYNLETHHRIIPFDERYEREAPRKSVY
PETYEASEQTANPRSFELDNPGKSQPIDGRTGEASEQPVTAGKAHMPKSVHQADDKIHAR
SSGPHPRVTQQPLKGKSKQGGQRVGEMEVRASEGYGVSHILQEMPTMKPDHVRARRKVVG
TLVAGEPVYDGPAEATTPESPRSPVREPRRLAPDLDLAVVENDLVSNNTYREGSSIL
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
acggtattagaaacaaatcaggacatgtttgtcatgcccgatcccggagaggcacgatcg
gaagcattttatcgtttcataaattggggatcgatggaagaaccgaatgattctccagga
atcgaggatacagatcgagagatgggacctcgaccgtttggtggacgatattacgtcata
gaaccattgagcgacaaaagagatgctgtgtacgagcccatcgcatatccgtccgagtcg
tatgtgccagtccaatcgactcgaaagggagaggcatgggcggaggagcaaatcgtatat
actggaagcaccccctcgacgagccctcaaggcacccttgtagtgaatggaattgataga
gttacaatcaatcagatctcaagaagtcctggcactcatcataagatggaacgaggtccg
aacggaaaccccgtgtacacaggcacaacaattccgaacaggggagggaagccaaaattg
gaacctgatgggaaaaaccgaatatgggttcgcgtgagaaagaaacggaaaacacccatt
caacccccgtcactggctatgggtccaagtacgaaagatattttggacaatgtatgttac
cccgacaattattgggaaaaaaaggacaacaatgtttggtcaagggaacacgccgtacca
gaatctcacaaattatcgtatggcacggacgaatatacggaattatccgatatatttgaa
gaatcacgacaaaaatcccctcaaccgaggttcgaaacaggagagattggtcgcacgaat
tcgaacaaaaaacccgatcccgaggtacctaaaaacgagattttcctattaccgaaagat
gtgttagctgctacagattatttaatcgggattgggattggaataggcactcttgatgat
atagatcacctgaaaaataggcgtattcgtactgtagcggatttattacaagatcaattg
agattggcgctagagcgtctagcggattctatgcgcggaggggtaagcagggctgctcga
cgtaagaacgtaccgaccatgagaagcgtagtaaattcgagtctattattaacaactttg
aaagaattttttggttcacatcccctctctcaatccctggatcaaactaatccattgaca
caaatggtacataaacgaaaactgagttctctaggcccagggggaccgacgagacgaacc
gcaagttatcaagtgcgagatattcatcccagtcattatggacgtgctcgccccattgaa
acgtccgaaggcacgaacgctggactcatctcatcgttagccttacatgcgggcgttaat
cattggggatatttaactagtcccttccataggatctccggagtcttatccgggggagga
gaggttgcagcttatgtatcggcagaggatgaaggctatcgaataactacaggaacttgt
tcgtacgtatatcggaaagatcggggggagcaagctaccgcagctcggtatcgacaggaa
ttcgtgactcttgcgtgggatcagatacatttacgaagtatttcgcctttacaaaatttt
tcagtgggagcctctctcattcctttcctggagaataacgatgcaaatcgtaccctaacg
ggctctaatacgcaacgtcaagctgcgccgctcctcagaaccgaacaacgcatcgtggga
acgggactggaaggtcaaatagcctcggatccgtgggatacggccatagccgtgcggggg
gggaaaatcgattatattgattgtgagagaacaacttcggtcgatgatggggagacaata
gaaaccgaatcggttatgtatcaaagccccaacaacaatactcgcgtgcaccagaaaccc
gccggcagattcggtaaaggtggattccccatgaaaggacagatcgcagcggacactggg
gctgcaaaaggaggagaattggcttcaggaagaaatatatcaatggcatacatgccttgg
gagggatacaattccgaggactccgtacctactagcgaacgtccaacatttgaaggtata
tacacgtctattcatattgagaaatatgagatggaggcccgcgtcacacttcaaggcact
gctgaaataattactaggaaaatacctcattcagatgattatttccctcgccactcggac
gagagtggccccgtatcaccaggatcccgggtagaaaccggagatgtattggtaggcaaa
ccaacaccccgaaatccggaagagtcaccgaaagctccggaaagtaactcaccgcaagcc
attcctggtattgacgtaactactgcaagagaaacctgcccaaaggtaccaacaggtggc
agaggtcgaattattgatgtcagatggatctatccggaggatacgtccaggtataagacg
agggttgtccatgtatatgttttgcaagtgcgcgaaatgcaggttggtgataaagcagct
gggagacatggtaataagggtattatcccaaagattgcacctagacaggatatgccttat
ttgcaggatggaacatcgatcgatatgataccgagtcctttgggggtgcctccgcgaatg
aatgtaggacagatctctgaacgtgtgcctggtcccgcgggatacaacctggagacacat
cataggataataccttttgatgagagatatgaacgagaagccccgagaaagtcagtatat
cccgaaacctatgaagctagtgagcaaacggctaatccacggtcattcgaacttgataat
cccggaaaaagccaaccaattgatgggagaacgggagaggcgtctgaacaacccgttacg
gcggggaaagctcatatgccgaaatcggttcatcaagctgatgataaaatccatgcacgc
tccagcggacctcatccgcgtgtcacgcagcaaccgctcaaaggcaagtccaagcaaggg
ggacagcgggtgggagagatggaagttcgggcttcggaaggttatggtgtctctcatatc
ctgcaagaaatgcctactatgaaacccgatcatgttcgggcccgtcgtaaggtggttggt
accctcgtggcgggggaaccggtatacgacggacccgccgaagcaaccactccggaatct
cctcgatcgcccgttcgagaaccacgacgtttagccccagatttggatctggctgtcgta
gagaatgatctagtatctaacaatacatatcgggagggctcctccatactgtga
DBGET
integrated database retrieval system
