Streptomyces moderatus: POD33_31575
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Entry
POD33_31575 CDS
T10886
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smod Streptomyces moderatus
Pathway
smod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POD33_31575 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smod03021
]
POD33_31575 (rho)
03019 Messenger RNA biogenesis [BR:
smod03019
]
POD33_31575 (rho)
Transcription machinery [BR:
smod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
POD33_31575 (rho)
Messenger RNA biogenesis [BR:
smod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
POD33_31575 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
NACHT
AAA_22
AAA_16
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
WCH96438
LinkDB
All DBs
Position
complement(6989371..6990507)
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AA seq
378 aa
AA seq
DB search
MTTTLENPPVRQQPPVRAVTGVLDIDANGKGHLRAENLLPAPADLPVSPALIRRYGLRKG
DLVDGVRGEGRTLTDVARVNGRTPDKNRRRFGELTPLHPRERIRLEHRAAGLTGRVADLI
APVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPECRLMVVLLDERPEEVTDMRRSVRG
EVYASTFDQTPKQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAAASGGRTL
SGGVDAAALHGPKRFFGAARLAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELRL
NRDLAHRRVFPAVDINPSGTRREELLLPPAELGVVRGLRRALQTRDGQTNLETLLERLRE
TPDNATFLRRIQPTLPGE
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccactctcgaaaacccacccgtccggcagcagcccccggtccgtgccgtcacc
ggcgtgctcgacatcgacgcgaacggcaagggacacctgcgcgccgagaacctgctgccc
gccccggccgacctgccggtctcgcccgcgctgatccgccggtacggcctgcgcaagggc
gacctggtcgacggcgtacgcggcgaaggacgcaccctcaccgacgtcgcccgcgtcaac
ggccgcacccccgacaagaaccgccgccgcttcggcgagctgacgccccttcacccgcgc
gagcggatccgcctggaacaccgggcagcggggctgaccggtcgggtcgccgacctgatc
gcccccgtgggcaagggccagcgcggcctgatcgtggccccgcccaagaccggcaagacg
gtcctgctccagcagatcgcggccgccgtcgccggcaaccaccccgagtgccggctgatg
gtggtgctcctcgacgagcgccccgaggaagtcaccgacatgcggcgctcggtgcgcggc
gaggtgtacgcctcgaccttcgaccagacgccgaagcagcacatcgcactggccgagctc
gtcatcgagcgggccaagcggctcgtcgaggcgggcgaggacgtcgtcatcctgctcgac
tccctgacccggctgtgccgggcgcacaacaacgcggccgcctccggtggacgcaccctg
agcggcggtgtcgacgccgcggcgctgcacgggccgaagcggttcttcggcgccgcgcgg
ctcgccgaggagggcggctcgctcaccatcctcgccacggccctggtggagaccggctcc
cgcgccgacgacttctacttcgaggagctcaagagcaccggcaacatggagctgcgcctg
aaccgggacctggcccaccggcgtgtcttccccgccgtcgacatcaacccgtcgggcacc
cgccgcgaggaactcctgctgcccccggccgagttgggtgtcgtacgcggcctgcgccgg
gcgctccagacgcgggacgggcagaccaacctggagaccctcctggaacgcctgcgcgag
acacccgacaacgccacgttccttcggcggatccagccgacgctgcccggcgagtga
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