Solobacterium moorei: RGT18_01370
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Entry
RGT18_01370 CDS
T09707
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smoe
Solobacterium moorei
Pathway
smoe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGT18_01370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smoe03021
]
RGT18_01370 (rpoC)
03400 DNA repair and recombination proteins [BR:
smoe03400
]
RGT18_01370 (rpoC)
Enzymes [BR:
smoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGT18_01370 (rpoC)
Transcription machinery [BR:
smoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGT18_01370 (rpoC)
DNA repair and recombination proteins [BR:
smoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGT18_01370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF7765
DUF6558
Motif
Other DBs
NCBI-ProteinID:
BET20549
LinkDB
All DBs
Position
137972..141853
Genome browser
AA seq
1293 aa
AA seq
DB search
MNINNFTAIKVGLASPEKILAWSYGEVKKPETINYRSQKPERDGLFCERIFGPTKDWECA
CGKFKKIRYQGVVCDRCGVEITKASVRRERMGHIELAAPVAHIWYLRGIPSRMALLLNVA
PKSLEEVVYFVSWIVTDPGDTKLEYKQILSEREYRENNAIYGAGSFVAQTGAEAIKTLLE
QCDVEAEYTAIMAELEKSTGDKRKKLIKRLETVEAFRNSENKPEWMVLTVLPVIPPDLRP
MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPAIIVQNEKRMLQEAVDALIDNGR
RSKAITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAIGPYLKMWQCGLPKE
MAINLYKPFVINELVNLQIASNPKTAEKLIGRQDPRVWDVVEKVIANHPVFLNRAPTLHR
LGIQAFFPRLVEGRAIRVHPLVCPAFNADFDGDQMAVHLPLSEMARAETEVLMLGSNNIL
GPKDGKPIVTPGQDLVLGNFYLNMEETAEEFKKKADALEQLGEKTEAARWRRYSENEGHV
FKDVNEVMMAYQTGVVHLHNRIALPARTVNKTGFTEEQNNKYLLTSVGKIIFNGVFPADF
PYLNEVTPENLKATPDSEFVPLGTDIKKELANRKVASEFKKKDLGNLIAAVFDHYKTNGT
SDILDSLKDMGYLYSTLAGMTVALSDISVAPNKKALVAEGRKKAEQFNMLRDRGLLTPQE
WEAKFSSLWNDVKNDVGNNLMESMARMNPINMMAVSGARGNKNHFTQLAGMRGLMARPTQ
SKSRKEYQPSIIEVPIYSCFREGMSVSEFFISTHGVRKGLTDTALKTAESGYLTRRLVDV
AQEVIIGEEDCGTERGYLVKNIYEDKILRPDEKPVLIEGLFDRIVGRYTQKPILDPKTGE
VIVEGDTLVDEDLAQKVVAAGVEEVYIRNVFTCESTNGICRKCYGRNMATGNLVEEGEAI
GIMAAQAIGEPGTQLTMRNFHTGGVATQNGDITQGLPRVEELFEARAPKGLAVISKIDGE
ITDVHDNENKTGTVIVVSNENESIEHKCDLTQVKRQNLNIGDHVSAGDKLTEGPIAPKEL
LEVAGVRAVQEYILKEVKKVYSSQSIDISDKHLEVMIKQMLKKVIVIEGNDSGLSAGQTL
SLANMNVINEDLLFDGKKPAKFGPLLLGISKSAVETDSFLSAASFQETTRVLTEAAVRGK
VDKLEGLKENVIIGKLIPAGTGRNFDRETSRRIEERAMELKEIREEKARELAEATANRLP
DEILGSNADVHVSSAESALALAERMKSEHNFDF
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgaatattaataactttacagcaattaaagtcggtctggcatcaccagaaaaaatcctt
gcttggtcatatggcgaagtgaagaagccagaaacaatcaactatcgttctcaaaagcct
gaacgtgatggtttattctgcgaacgcattttcggtcctactaaggactgggagtgcgct
tgcggaaagttcaagaagattcgttaccaaggcgtagtctgcgaccgatgtggtgttgaa
attacaaaggctagcgttcgtcgtgaacgtatgggtcatattgaactcgctgctccagta
gcacacatttggtatttacgtggaattccttcccgaatggcacttctattaaacgtagcg
cctaagtcattagaagaagttgtatacttcgtatcttggatcgtaactgatccaggagac
acaaagcttgaatacaagcagattctttctgaaagagaataccgcgaaaacaacgctatt
tatggtgctggtagcttcgttgcacaaacaggtgcagaagcgattaagacgctgcttgaa
caatgtgatgttgaagcagaatatacagcaattatggcagagcttgaaaagtctacaggt
gataagcgcaagaaactaatcaagcgtttagaaacagtagaagctttccgtaattctgaa
aacaagccagagtggatggtattaactgtattgccagttatcccaccggatcttcgtcca
atgttacagttggatggtggtcgtttcgccacttctgacttaaacgatttatatcgtcgt
gttattactcgtaataaccgtttaaagaagttgcttgaacttggaacacctgcaatcatc
gtgcaaaacgaaaaacgtatgttacaggaggcggttgatgcgttaattgataacgggcgt
cgttctaaagcaattacaggtgctggcggacgtgcactcaagtctctatctcattcctta
aagggtaagcagggacgtttccgtcagaacttattaggtaagcgtgtcgacttctctggt
cgttctgttattgcgattggaccatacctcaagatgtggcagtgtggattacctaaggaa
atggcaattaatttatataagccattcgttattaacgaattggtaaacttacagattgcg
tcaaatcctaagacagctgagaagttgattggtcgtcaagacccacgtgtttgggatgtt
gtggaaaaggttatcgctaaccacccggtattcctaaaccgtgcacctacacttcaccgt
ttaggtattcaggcattcttcccacgcttagttgaaggtcgtgctatccgtgtgcatccg
ttagtgtgtcctgcgtttaatgcggacttcgacggtgaccagatggctgtccatcttcca
ttaagcgagatggcaagagctgaaactgaagtcttaatgctaggttctaacaatatctta
ggccctaaggatggtaagcctattgttacacctggacaggacttagtactaggtaacttc
tacttgaacatggaagagacagctgaagagttcaagaagaaggcagacgctctagaacag
cttggtgaaaagactgaagcggcaagatggagaagatatagtgaaaatgaaggacatgtc
ttcaaggatgtcaatgaagtaatgatggcataccagacgggggttgttcacttacataat
cgtatcgctcttcctgcaagaacagttaacaagacgggctttacagaagagcaaaataac
aagtacttattaacatcagttggtaagattatctttaatggtgtattcccggcagatttc
ccatatctcaacgaggtaactccagaaaatctaaaggcaacaccagattcagagtttgtt
ccactaggtacagatatcaagaaggaacttgctaaccgcaaggtagcatctgaattcaag
aagaaggacctaggaaacttgattgcggctgtctttgatcactataagacaaacggcaca
tcagacatcttggatagcttgaaggatatgggatacctctattcaacattagcgggtatg
acggtagctctcagcgatatctctgtagcacctaacaagaaagcgttagtagctgaaggt
cgtaagaaggctgaacagttcaacatgttacgtgacagaggtctattaacacctcaggaa
tgggaagcaaagttctcctcactctggaatgatgttaagaatgatgttggtaacaacttg
atggaatctatggcacgtatgaacccaatcaacatgatggcggtatctggtgctcgtggt
aataagaaccattttacacagttagctggtatgcgtggattgatggcgcgccctactcag
tctaagtcccgtaaggaataccaaccatctattattgaagtcccaatttactcatgtttc
cgtgaaggaatgagtgtatcagagttctttatctctactcacggtgtacgtaagggatta
acagatacagccttgaagactgctgaatctggatacttaacacgtcgtcttgtcgatgtc
gctcaagaagttatcatcggagaagaggactgcggaacagaacgtggatatctcgttaag
aacatctacgaagataagattctacgtccagatgaaaagccagtattaattgaaggctta
ttcgatcgtatcgttggccgttacacgcaaaagccaatcttagatcctaagacaggtgaa
gtaattgttgaaggcgatacattagtagatgaagatttagcacagaaggttgttgcggct
ggagttgaagaggtttacattcgtaacgtattcacttgtgaatctacaaatggcatctgc
cgtaagtgctatggtcgcaacatggctacaggcaaccttgttgaggaaggtgaagctatt
ggtatcatggccgctcaggcgattggtgaacctggtacacagctaacaatgcgtaacttc
cacactggtggtgttgcgacacagaacggtgatattacacagggtcttcctcgtgtagaa
gaattgttcgaagcgcgtgcacctaagggattagctgtcatctctaagattgatggcgaa
atcacggatgtacatgacaatgaaaacaagacaggtacggttattgttgtatctaatgaa
aatgaatctatcgaacacaagtgtgacttaacacaggtgaagcgtcagaacttaaatatc
ggcgatcatgtatctgctggtgataagttaactgaaggtccaatcgctcctaaggaactg
ttggaagtagctggtgtaagagctgttcaggaatatatcttgaaggaagttaagaaggtt
tactcttctcagtccatcgatatttctgacaagcacttggaagtaatgatcaagcagatg
ttaaagaaggtcatcgttatcgaaggtaatgactcaggcttaagtgctgggcagacatta
tcactcgctaatatgaacgtaattaacgaagatctattgttcgacggaaagaaaccagcg
aagtttggtccattactcttgggcatctccaagtcagctgttgaaacagattcattctta
tccgctgcatccttccaggaaacaacaagagttcttacagaagctgcagttagaggtaag
gttgataaacttgagggtcttaaggagaatgttatcatcggtaaacttattccagctgga
acaggtagaaactttgaccgtgaaacatcacgccgcattgaagagcgtgcaatggagctc
aaggaaattcgtgaagaaaaagctagagaactcgcagaagcaactgcaaacagattgcct
gatgagattctcggaagcaacgcagatgtgcatgtaagtagtgcagaatccgctcttgct
ttggctgaacgcatgaagtcagaacataactttgatttctaa
DBGET
integrated database retrieval system
