Solobacterium moorei: RGT18_20220
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Entry
RGT18_20220 CDS
T09707
Symbol
rlmD_3
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
smoe
Solobacterium moorei
Brite
KEGG Orthology (KO) [BR:
smoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smoe03009
]
RGT18_20220 (rlmD_3)
Enzymes [BR:
smoe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RGT18_20220 (rlmD_3)
Ribosome biogenesis [BR:
smoe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RGT18_20220 (rlmD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_4
Methyltransf_11
UPF0020
PrmA
Herpes_teg_N
Motif
Other DBs
NCBI-ProteinID:
BET22434
LinkDB
All DBs
Position
2014553..2015857
Genome browser
AA seq
434 aa
AA seq
DB search
MKVEFKKLGINGEGIGFIKRKPVFCDGVLPEEAAEVEIIEEKPKYVMARLKRLITKSPER
IESPSPLEQAHGCPLFILDYQKQLRHKQDILEQALYKYGNVKRSFVRDMHASEKQVGYRS
QCKLPVQKSHDILVNGMYEPKTNHFHPIDHFLIHDPKLEEIRKEILRILNEEGYDAYNQR
SQKGLRYIVLRVIDGKAQCTLITGKEHIPSIIIDRIMEIPGMESLCQSFNTNRKTNQIFG
SPAKVLAGQNTLTISMDQIQLQLSAESFFQLNINQAEKMYQMAISKIDPCKVLVEAYCGI
GTMALMAKDKANVVYGIESVPSAVENATNNAKLNNITNTEFICDDAAHGLRKIAMKKTVD
CLLIDPPRSGMDDEMLNTIMHVLPKKIIYISCNPSTLAKNLKVLKQRYHVVTVIPYDLFP
QTPLVESITVLELG
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtagaatttaaaaaattaggaattaatggcgaaggtatcggttttatcaagcgc
aagccagtattctgtgatggagtattacctgaagaagcagcagaagttgaaatcattgaa
gagaaaccaaagtacgtaatggctcgcctcaagcgacttattacaaagtcaccagaacgt
attgaatccccaagcccattagaacaagcacatggttgtcctctctttattttggattac
caaaagcaattacgtcacaaacaagatatccttgaacaagcattatataaatacggaaat
gtaaaacgttcctttgtgcgtgatatgcacgcaagtgaaaaacaagttggttaccgttcc
caatgcaagctaccagtccaaaaatcacatgatattttggtcaatggtatgtatgaacca
aagacaaaccattttcaccctatcgaccatttcctaatacatgatccaaagttagaagaa
atccgtaaagaaatcttacgcattctcaacgaagaaggttatgatgcctataaccagaga
tcacaaaaaggactacgctatatcgttctacgcgtaattgatggcaaagcacagtgtacc
cttatcactggtaaagaacatatcccttccatcatcattgatagaatcatggaaattcct
ggtatggaatctctatgtcaatcctttaatactaatcgtaagacaaatcagatatttggt
tcacccgcaaaagtactcgcgggccaaaacacattaacaatttctatggatcagattcaa
ctacaactttcagcggaatccttcttccagctaaacatcaatcaagccgaaaagatgtat
cagatggcaatcagtaagattgatccatgtaaggtattagtagaagcttattgcggtatt
ggtacgatggcacttatggccaaggataaggcaaatgtagtctatggtattgaatccgtt
ccaagtgcagtcgaaaatgccacaaacaatgcgaaactaaacaacatcacaaacacagaa
tttatctgtgatgatgcggcacatggtttacgcaagattgcgatgaagaagacagttgac
tgcttattaatcgatccacctcgtagtggtatggatgatgaaatgttaaataccatcatg
catgtattaccaaagaagatcatatatatctcctgtaatccatccactcttgcaaagaac
ctaaaagtactcaaacaacgctatcatgtagtaactgtgattccatatgacttattcccg
caaacaccgctggtagaatctattacagtattggagctaggttaa
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