Solobacterium moorei: RGT18_21640
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Entry
RGT18_21640 CDS
T09707
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smoe
Solobacterium moorei
Pathway
smoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGT18_21640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smoe03019
]
RGT18_21640 (rnr)
03016 Transfer RNA biogenesis [BR:
smoe03016
]
RGT18_21640 (rnr)
Enzymes [BR:
smoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RGT18_21640 (rnr)
Messenger RNA biogenesis [BR:
smoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGT18_21640 (rnr)
Transfer RNA biogenesis [BR:
smoe03016
]
Prokaryotic type
tRNA degradation factors
RGT18_21640 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
TnpV
Motif
Other DBs
NCBI-ProteinID:
BET22576
LinkDB
All DBs
Position
complement(2148625..2150958)
Genome browser
AA seq
777 aa
AA seq
DB search
MENLKERILEYIENHPKKNRRVDDILSALGMTSSSDFVKVSQALSELERELLLFRADDNQ
YLTQKQAGVMTGRISINRSGLGFVDREDKESIKIDPTDQNTALDGDTVLVRCKPWETYGE
VLRVITRAKDFMIGTFLPRGKRLKFIPDDEKLQDKLITVKYDQDFLPVEGMKVLCRIQKY
GTAIVVYVERVIGYKDDPGVDILAILLDHDIDPQFPEAVMEEVKTIPQEIQESDKKDRVD
LTSETIVTIDGDDSKDFDDAVGVTPVENGWVLKVSIADVSHYVTEDSALDQEALARGCST
YVTDRVVPMLPHELSNGICSLNPYVERLTITCQMNVNHSGKIEEYSIYPSVIRSTERMTY
ANVNKILDGDEKLQEAYKHLGNLFFDLRDCADAIRVNRTAKGAIDFDGTETVVEVDENGH
PIDVHARMSGHAERMIEDCMIAANVSVANYMKWLDVPSIYRIHESPTAKKMKEFVRISEG
MGHKLVLGKTAIYPNELQRYLASVHDIPEYPVLSTMLLRCMQKARYDASCIGHFGLAEDE
YLHFTSPIRRYPDLVVHRMLRKYCFQANDNLEQRTIYLEKCKAQAEHASIRERNSQDAEY
ACEDMKIAEYMHERIGKTYSGIISSITSFGMYVKLENTVEGMIRVADLDDDYYEFNKDRF
ELVGQRRKKTYRIGMPIKITVIDANKDAGTVDFAIAKKPSRFSLGRDRFSNDRRSSQTRM
PREDRKFGDKKDKKPFSPKKRGKFDGSKPSHIKQSDKKSFFKGKSTGRKMTHGRKDA
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggagaatttaaaagagagaatattagaatatattgaaaatcatccaaaaaagaatcgt
agagtggacgatattttaagtgcacttgggatgacttcctcatcggatttcgtgaaagta
agccaagcattatctgaattagaacgtgaattactattatttagagcagatgataaccaa
tatttaacacaaaagcaggctggagtcatgacgggtagaatttctatcaatcgttctggt
cttggttttgtagaccgtgaagataaggagtcaattaagattgatcctactgatcaaaat
actgcactagatggagatactgttcttgttcgctgcaagccttgggaaacctatggtgaa
gtattacgagtaattacacgtgcaaaggattttatgattggtacgtttttgccacgtggg
aaaagactaaagtttattcctgatgatgaaaagctacaggataaattaatcacagtaaaa
tatgaccaagattttcttcctgttgagggaatgaaggttctttgtcgtatacagaagtat
ggaacagcaattgttgtatatgttgaacgtgtaattggttacaaggatgatccaggagta
gatattcttgcgatacttcttgaccatgatattgatccacaattccctgaagctgttatg
gaagaggttaaaacaattccccaggaaattcaggaaagtgataagaaagaccgcgttgat
ttaactagtgaaacaatcgttaccattgatggcgatgactcgaaagactttgatgatgca
gtgggtgttacacccgttgaaaatggttgggtgttaaaggtttccattgcagatgtatcg
cattacgtaacagaagatagtgctttggatcaggaagctcttgcacgtggttgttctaca
tacgtgacagacagggttgtaccaatgttaccacatgagttaagtaatggtatctgttct
ttaaatccatatgtagaaagattaacaatcacatgccagatgaatgtcaatcacagtggt
aagattgaggaatactccatttatccaagtgttatccgttctacagaacgtatgacatat
gcaaatgtaaataagattctagatggtgatgaaaaactacaagaagcgtataagcattta
ggcaatctcttttttgatttaagagattgtgctgatgcaattcgtgtaaatcgtacagcg
aagggtgctatcgactttgatggcacagagacagtagtggaagtggatgagaatgggcat
ccaattgatgtacatgcacgtatgagtggtcatgcggaaagaatgattgaagactgcatg
attgcggctaatgtatctgtagccaactatatgaagtggttggatgtaccatccatttat
cgtattcatgagtcaccaaccgcaaagaagatgaaagaatttgtacgtatctccgagggt
atggggcacaagttggttttaggtaaaacagcgatttatccaaatgaattgcagagatat
ttagcatctgtacatgatattccagaatatccagtactaagtacaatgttattgagatgt
atgcagaaagcgcgatatgatgcttcttgtattggacactttggcctagcagaagatgaa
tatttacactttacttctccgattcgtcgttatccagatttggtcgtacatcgtatgtta
cgtaagtattgtttccaagcgaacgataacttagaacaacgcacaatttatctagagaaa
tgcaaggcacaagctgaacatgcaagcattcgcgaaagaaatagtcaagatgctgaatat
gcatgtgaagatatgaagattgcggaatacatgcatgaaagaattggcaagacttattct
ggtattatttcaagtattacaagctttggcatgtatgtgaaacttgaaaacacagtagaa
ggtatgattcgtgttgcggacttagatgatgactattatgagtttaataaagatcgtttt
gaacttgtaggtcaaagacgtaagaagacatatcgtattggcatgcctattaagataaca
gttattgatgcgaataaagatgcaggtactgtagactttgcgattgcaaagaagccatca
agattctctttaggacgtgatcgtttctcaaatgatcgtcgttcttcacaaacacgtatg
ccaagagaagataggaaattcggtgacaagaaggataaaaaaccattctcacccaaaaaa
cgtggtaaatttgatggttcaaaaccatcgcatataaaacagagtgataagaaatcattc
tttaaaggaaaatcaaccggaaggaagatgacgcatggtagaaaagacgcatga
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