Spirosoma montaniterrae: AWR27_06425
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Entry
AWR27_06425 CDS
T04702
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smon
Spirosoma montaniterrae
Pathway
smon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWR27_06425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smon03019
]
AWR27_06425
Enzymes [BR:
smon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWR27_06425
Messenger RNA biogenesis [BR:
smon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWR27_06425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UvrD-helicase
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AQG78993
UniProt:
A0A1P9WUH7
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All DBs
Position
complement(1480528..1481976)
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AA seq
482 aa
AA seq
DB search
MQFSDLALIDPIQKALTEEGYTTPTPIQQQAIPILLSQRDLLGCAQTGTGKTAAFAIPIL
QLLTEERSKNSTGPRRIKTLVLTPTRELAIQIDESFAAYGRHLNLRHAVIFGGVSQHSQV
NTLKAGIDILVATPGRLLDLMNQGFVHLRDIRFFVLDEADRMLDMGFIHDVKKVIAKLPE
RRQSLFFSATMPPDVAKLADTILNNPAKIEVTPVSSTADTIEQALYFVSKDDKRKLLIHV
LDDKAIKSALVFARTKHGADKVVKDLVKAGVKAEAIHGNKSQNARQRALSNFKSGETRVL
VATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGNDGIALSFCEAEETAYLKD
IQKLIGKRVPVIENHPYVLAVDMAVSTPPPPQRQGRQGNAPRNGGQRQQHDGQRSNLSRN
SGNPNRSNTRPDATAAGSARPDRPQRHSRSDNPQRSRPATGEKPSRGTGNSRYLDFGNEK
NY
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgatttagcacttattgacccgatccagaaggctcttaccgaagaagga
tacacaactccaacacccattcagcaacaggcgattcctattctgctgagccaacgcgat
ttactcggctgcgcccagactggcaccggcaaaacagccgcttttgccattccgattctc
cagctccttaccgaagaacgtagcaaaaactcaaccggtccacgccggataaaaacactt
gtactgacgcccacccgcgaattagccattcagatcgacgaaagctttgcggcttacggg
cggcatctgaatctgcgccacgccgttatttttggtggggtttcgcagcacagccaggta
aatacccttaaggcaggcatcgatattctggtggcaacgccgggccgtttgctcgacctg
atgaaccaggggtttgtacacctgcgcgacatccggttctttgttctggacgaagccgac
cggatgctcgatatgggctttattcacgacgtaaagaaggtgatcgccaaacttcccgaa
cggcggcagtcgctgtttttctcagctacgatgccgcccgacgtggcaaaactggccgat
accattctgaataatcctgccaagatagaagtaacgcccgtttcatcgactgccgacacc
attgagcaggccctgtattttgtcagtaaagacgataaacgcaaactgctgattcacgtt
ctcgacgacaaagccattaagtcggctctggtgtttgcccgcaccaaacatggtgccgac
aaagtagtaaaagacctcgtcaaggcgggcgtgaaagcggaagctattcacggcaacaaa
tcgcagaatgcccgtcagcgtgcgctgtcgaatttcaagtcgggcgaaacgcgggtactg
gtcgctactgacattgccgcccgtggtatcgacgtcgaccagctttcgcacgtaatcaat
tatgaactgccgaacattccggaaacgtatgttcaccgtatcggtcgcacgggccgtgcc
gggaatgatggtatcgcgctctcattttgcgaagccgaggaaacagcctatctgaaagat
attcagaagctgattggcaaacgggtgccggttatcgaaaaccatccgtatgtactggcc
gtagacatggcggtttcaacacctccacccccacaacggcagggaaggcagggaaatgca
ccgcgcaacggcggtcaacgccagcaacacgacgggcaacggtccaatttatcgcgcaac
agcggcaatccgaaccgaagcaatacccgacccgatgccacggctgctggttcggcccgc
cccgaccgaccccagcgacacagccgtagcgataatccgcaacgctctcgacctgcaacg
ggcgagaagcccagccggggtactggaaacagtcgctatttagacttcggaaatgaaaag
aattattaa
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