Spirosoma montaniterrae: AWR27_17880
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Entry
AWR27_17880 CDS
T04702
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smon
Spirosoma montaniterrae
Pathway
smon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWR27_17880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smon03019
]
AWR27_17880
03016 Transfer RNA biogenesis [BR:
smon03016
]
AWR27_17880
Enzymes [BR:
smon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AWR27_17880
Messenger RNA biogenesis [BR:
smon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWR27_17880
Transfer RNA biogenesis [BR:
smon03016
]
Prokaryotic type
tRNA degradation factors
AWR27_17880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AQG81025
UniProt:
A0A1P9X0C0
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All DBs
Position
4183198..4185633
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AA seq
811 aa
AA seq
DB search
MRNGKPKTNKYSRPSTSRSREKGVEKAGRPVIQADRFLDELKNDLIAFFQINGDDSFTQE
QVLDHFDVADRRMKLILHGLLGELLEEGSIVRQADGTYRADANANTVEGVVDHVNSRFAF
VIPTTVNGERSERDDHIWVSTDDLNGAVDGDRVRVIRFTDSRNRGRRIEGKVESVIERGR
TELVGRIEVWPAYGYVVADSKKIYDDIYIPKEKLGGANDDEKVIVRITKFPDALSSKQRF
EGEVITVLGVAGQNDTEMHAILAEFGLPINFPEDVEQEAEAIPTKILKKDLAKRRDMRDV
TTFTIDPVDAKDFDDALSVQVLDNGNYEIGIHIADVTHYVLPGSRLEEEAYKRATSVYLV
DRVVPMLPEKLSNGLCSLRPNEDKLTFSAVFELTPDARIVNEWFGRTAIHSNRRFSYEEA
QEILNTSAGDYLAELQLLNELAYKLRNERFKHGAINFETTEIRFRLDENGVPLGVYTKLR
QDTNKLIEEFMLLANKRVAEFVHSLSKQNKAGAENTMVYRVHEGPDEEKLRQFADFAARL
GYKLNVDEEKLSSSMNRFMASIEGKPEAGMLSQLAVRTMSKARYSTEDIGHFGLAFRRYS
HFTSPIRRYPDMMAHRLLQHYLDRGKPADREPLEDQCKHASAREKMASDAERASIKYKQV
EFMSRMPADQTFAGVISGVTEFGIFVEITENNCEGLVRMQDLSDDFYEFDKDNYRIIGSR
HKKMYTFGDAVEVRVKETNLARRSMDFMLVSDKAGHATDSGNRRSGRRDSERGSREGGAS
SRSSSSGRSSGKRSSGPAPKGENRRGGRGRR
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacggaaaacccaaaacgaataaatacagccgaccgagcacgtctcggtcgcgg
gagaagggtgtagagaaagcgggtcggcctgttatacaggccgaccgctttttagacgaa
ctgaaaaatgacctgatcgcctttttccagattaatggtgacgattcatttacgcaggaa
caggtactcgatcatttcgacgtggccgaccgacgcatgaaactcatcctgcacggtctg
ctcggcgaactgctcgaagaagggtcgattgttcggcaggccgatggcacataccgcgcc
gatgccaacgctaacaccgttgaaggcgtggtcgatcacgttaattcgcgctttgcgttc
gtgattccaaccacagtcaatggcgaacgcagcgaacgcgacgaccatatctgggtatcg
accgacgaccttaacggggccgtcgatggcgaccgggtgcgcgtaattcgctttacagat
tcgcgcaatagagggagacgcatcgaaggcaaagtcgaaagcgttatcgagcgggggcgt
actgaactggtaggccgcattgaggtgtggccggcttacggctatgtagtggccgacagc
aagaagatttacgacgacatctacattccgaaagaaaagctcggcggtgccaacgacgac
gagaaggttattgttcgcatcacgaagtttcccgacgcgctgagcagcaaacaacgcttt
gagggcgaagtgattacagtgctgggagtggccgggcagaacgacaccgagatgcacgcc
attctggccgagtttggtttgcccatcaatttcccggaagacgttgagcaggaagccgaa
gccattccgacgaagattctgaaaaaagacctcgccaaacggcgcgacatgcgcgacgta
acaacgtttaccatcgacccggttgatgccaaagactttgacgacgcgctctcggtgcag
gtgttagacaacggcaactacgaaatcggtattcacattgccgacgtaacgcactacgta
ctgcccggctccaggctcgaagaggaagcctataaacgggctacgtcggtttatctggta
gatcgcgtggtgccgatgttgcccgaaaaactctcgaacggcctgtgttcgctgcggccc
aacgaagacaaactgactttctcggcggtgtttgagctaacccccgacgcccgcatcgtg
aacgaatggtttgggcgcacggccattcactcgaaccggcgattcagctacgaagaagcc
caggaaatactgaatacgagcgcaggcgattatctggccgaactgcaactactcaacgaa
ctggcttataagctacgcaacgagcgattcaagcatggtgctatcaattttgagaccacc
gaaattcggtttcggctcgatgagaacggcgttccgctgggcgtatataccaagttgcgg
caggataccaacaaactcatcgaagagtttatgctgctggcaaacaagcgcgtggccgag
tttgtgcattccctctcgaaacagaataaagcaggggcggagaacacgatggtgtaccgc
gttcacgaaggccccgacgaagaaaagctacgccaattcgctgattttgccgcccgcctg
ggctataagctgaacgttgacgaagaaaagttatcgagttcgatgaaccggtttatggcg
agtatcgaagggaaacccgaagccggtatgttgtcgcaactggccgttcgaaccatgtcg
aaagcgcggtatagcacagaagacatcggccactttgggctggcgtttcggcggtattcg
cactttacctcgcccatccgtcgctaccccgacatgatggcccaccggctgttgcagcac
tacctcgacagaggcaaacccgccgaccgcgaaccactcgaagatcagtgcaaacacgca
tcggcccgtgagaaaatggcgtccgatgccgaacgcgcaagtattaaatataaacaggtc
gaattcatgagccggatgcccgccgaccaaacgttcgccggggtaatttcgggcgtgacg
gagttcggcattttcgtagaaattaccgaaaacaactgcgaaggtctggtgcggatgcag
gacctgagcgacgatttctacgagttcgacaaggacaattaccgcatcatcggcagtcgg
cacaagaaaatgtacacctttggcgacgccgtagaagtacgcgtcaaagaaaccaacctc
gcccgccgaagcatggatttcatgctcgtgagcgacaaagccggtcacgcaaccgattcg
ggcaaccgccggtcgggtcggcgcgatagcgaacggggttcgcgggagggcggggcatcg
tcgcgttcgtcttcttcgggtcgttcgtcgggtaaacgtagcagtggccccgcgcccaag
ggcgaaaatcggcggggaggccggggcagacggtaa
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