Spirosoma montaniterrae: AWR27_20395
Help
Entry
AWR27_20395 CDS
T04702
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smon
Spirosoma montaniterrae
Pathway
smon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWR27_20395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smon03400
]
AWR27_20395
Enzymes [BR:
smon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWR27_20395
DNA repair and recombination proteins [BR:
smon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWR27_20395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQG81464
UniProt:
A0A1P9X1F9
LinkDB
All DBs
Position
complement(4785210..4788563)
Genome browser
AA seq
1117 aa
AA seq
DB search
MKPDELLGLYTDESFIKLLTEPFGRRTADEPQRLQIKGLSGSLDALLAASVFKSVGGNHL
YVLTDRDEAAYFFNDLQNLLSREVLLFPMSYKKPYQYEEIENANVLMRAEVLNKLNPAPK
NGLLIVTYPEALSEKVINKRSLQANTLTIRVGEKLDTNFVAELLQNYEFEKTDFVYEAGQ
FSVRGGIIDVFSFASEFPFRIDLFGDEVESIRKFNPETQLSTDAVDFINVIPNIQTKLVE
ETREPFFDFFPDGTTVWVKDVEFTLDIIEKCYEKAEQRFESTVAGSGGIQIVSDPGELFE
TRRSFLNELKKFRTVEFGRKFYFKTESRQQYPSKQQPSFNKDFKRLVDTLGDLQAKGYTN
IIAAESFKQLDRLQTIFEELDPFVKFQPLNIGIREGFLDDALKIAVFTDHQIFDRFYKYR
VQDKFSKSKALTLRELKTLQPGDYVTHVDHGIGRFAGLEKVDNNGNEQEAIRLIYRDNDM
LLVSIHSLHKIAKYSGKEGGPPTMNKLGSQEWENKKSRIRKQVKDIARELIALYAKRRTA
PGYAYSRDSFLQVELESSFLYEDTPDQAKATNDVKDDMERPHPMDRLVCGDVGFGKTEVA
IRAAFKAVTDNKQVAVLVPTTILAMQHFKTFSERMADFPVKIEYINRFRSSAQIKEILKG
TASGEIGILIGTHRIVNKDVKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTATP
IPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHAFNEAVIRDAISYEIRRGGQVFFVHNR
VNDIESIGNLIMRLVPDARIGVAHGQMEGDKLERTMTRFIEGDYDVLVSTNIIESGLDIS
NANTILINNAHFFGLSDLHQMRGRVGRSNRKAFCYLLTPPPTVLTADARKRLQTLEDFSD
LGEGFKIAMRDLDIRGAGNLLGAEQSGFINDLGFEMYHKILDETVQELRENEFKDLFETK
PGDLKLALPDTIIETDLTIVIPERYVQNISERLALYTRLDSIQTEEELRAFRQEILDRFG
PLPEEVENLIQMVNVRWKAERLYLEKLTLKNTILKGYFVSNGNDAFFTGEQFGKVIEYIK
QNPGQCSLKESKGRPIFTHTDVHSVEQLDEILKAMTE
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacccgatgaattgctcggtttatataccgatgaaagctttataaaattgttgacc
gaaccgtttggccgacgaaccgccgacgagccgcaacgactccagattaaaggtctgtcc
ggtagcttagacgccctattggctgcgtcggtttttaagtcggtaggtggtaatcaccta
tacgttttaaccgaccgcgatgaggctgcttactttttcaacgacttgcaaaacttgttg
agtcgggaagttctgctgtttccaatgtcgtacaaaaaaccgtaccaatacgaggaaatt
gaaaatgccaatgtgttgatgcgggctgaggtactgaacaagctgaatccggcaccaaaa
aacggactgcttatcgtgacgtatcctgaagcattgtccgaaaaagtaatcaataagcgt
tcgttgcaggcaaacacgctgaccattcgggtaggagagaagttagacacaaattttgtg
gctgaacttctccagaactatgaattcgagaagaccgattttgtgtatgaagccggtcag
ttttcggtgcggggtggtatcatcgacgtgttttctttcgcgagtgaattcccatttcgg
atcgatttgttcggcgatgaggttgaaagcattcgtaaattcaatcctgaaacgcaactt
tcgaccgacgccgtcgatttcattaacgttatccccaatattcagaccaaacttgttgag
gaaacccgtgagccattttttgatttttttcccgatggcacaaccgtttgggtaaaagac
gtagaatttacactcgatatcatcgagaagtgttacgaaaaagccgagcagcgtttcgag
tcaacagtggcaggtagtggcggtattcagattgtgtctgaccccggtgaattgttcgaa
acacgccgttcatttttgaacgagctaaagaaattcaggaccgtagagtttgggcgcaaa
ttctacttcaaaaccgaaagcaggcaacaatacccgtcgaagcagcaaccgtcgttcaat
aaagattttaaacgattggtcgatacactcggcgatctgcaggcgaaggggtacacgaat
ataattgccgccgaatcgttcaagcaactcgaccggttgcagacgatttttgaagaatta
gatcccttcgtgaaattccagccgctgaacatcggcatccgcgaaggcttcctcgacgat
gcgctgaagatagccgttttcacagaccatcagatttttgaccgtttctacaaataccgc
gttcaggacaagttctcgaagtcgaaagcgttgaccctgcgcgaactgaaaacgttacaa
ccgggcgactatgtaacgcacgtcgaccacggcatcgggcggttcgcgggcttggaaaaa
gttgataacaatggcaacgaacaggaagctatccggttgatttatcgcgataacgacatg
ctgttagtgagcattcacagcctgcacaagattgccaaatacagtggcaaggaaggcgga
ccgcccacgatgaacaagctcggttcgcaggagtgggagaacaaaaagtcgcggattcgc
aaacaggttaaagacattgcccgcgaactgattgcgctctacgccaaacgccgaactgcc
cccggctacgcctacagccgcgacagctttttacaggttgaactcgaatcgtcgttcctg
tacgaagacacgcccgatcaggcaaaagcgaccaacgacgtgaaagacgacatggagcgt
ccgcacccgatggaccggctcgtgtgtggcgacgtggggtttggcaaaacagaagtggca
atacgggctgcgtttaaggccgtaaccgataacaagcaggtagctgtgctggtgccaact
acgattctcgccatgcagcattttaaaacgttctcagagcgaatggccgattttcctgtt
aagatcgagtacatcaatcgctttcgctcgtcggcgcaaataaaagagattctgaaaggc
accgcatctggcgaaatcggcatcctgattggcacgcaccgaatcgtgaataaagatgtg
aagttcaaagatttaggattgctggtgattgacgaagagcagaagtttggcgtaaaaaca
aaagaccggctcaaagaaatgcgggtagaagtcgacgtacttacgctcacggccacgcct
attccacgcaccctgcatttctcgctcatgggcgcacgcgacctctcggtaattgctacg
cccccaccaaaccgccagccggttacgaccgaagtacatgcgtttaatgaggccgttatc
cgcgatgccatcagctacgaaatccgacgcggagggcaggtgttctttgtgcataaccgc
gttaacgacatcgaatctatcggcaacctcatcatgcggctcgtgcctgatgcccgtatt
ggcgtggcacacggacaaatggaaggcgataagctcgaacggacgatgacgcgctttatt
gagggtgattacgatgtactggtatctaccaatattattgaatctggtctggatatttcg
aatgccaataccattctcatcaacaacgcgcacttcttcggcttgtcagacctgcaccaa
atgcggggtagggtaggccggtctaatcgcaaggcgttctgttatttactgacacccccg
ccaaccgtgctgaccgccgatgctcggaaacgtttgcaaacccttgaagacttttcggat
ttgggagaaggtttcaaaatagcaatgcgcgacctcgacattcggggagcgggcaatctc
cttggagccgagcaaagcggcttcatcaacgatctgggtttcgagatgtatcacaagata
ctggatgaaacagtacaggaacttcgcgaaaatgagttcaaagatctgttcgagactaag
cccggcgacttaaaacttgccctgccagatacgatcattgaaactgatttgacgattgta
atcccagagcggtatgtacagaatatctcggagcgattggcgttatacacccgcttagac
agtattcagactgaagaggaactacgggcctttcggcaggaaatactcgaccgcttcggg
ccgctacccgaagaagtcgaaaacctgattcagatggtgaacgttcgctggaaagcagag
cggttataccttgaaaaactgacccttaagaatactatactgaaaggctacttcgtttct
aacgggaatgacgctttctttacgggcgaacaatttggcaaggtaattgagtacatcaaa
caaaatcccggccaatgttctctgaaagagtctaaagggagacctattttcacccatacc
gatgtccattcggttgaacaactggacgaaattctaaaagcaatgacggaatga
DBGET
integrated database retrieval system
