Spiroplasma monobiae: SMONO_v1c00440
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Entry
SMONO_v1c00440 CDS
T06543
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smoo
Spiroplasma monobiae
Pathway
smoo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMONO_v1c00440 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smoo03021
]
SMONO_v1c00440 (rpoB)
03400 DNA repair and recombination proteins [BR:
smoo03400
]
SMONO_v1c00440 (rpoB)
Enzymes [BR:
smoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMONO_v1c00440 (rpoB)
Transcription machinery [BR:
smoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMONO_v1c00440 (rpoB)
DNA repair and recombination proteins [BR:
smoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMONO_v1c00440 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
GH43_C
Motif
Other DBs
NCBI-ProteinID:
AUM62297
UniProt:
A0A2K9LTE4
LinkDB
All DBs
Position
40619..44434
Genome browser
AA seq
1271 aa
AA seq
DB search
MKYKIKKINALVERRDYAKVSGDLELPNLIELQTDTFEWFKQKGINEVFEEVFPVVSADG
DIVLSMTDWEFREPRLSITKAKEESKIFEAPIYSNLSLTIHMEDVEVFKEEISGSMETFL
KGWLQEKLESTGVEFKDSKGSLYFFEFKGKTGEKDTIQIEIKDEKDEFYLANIDIYKTGE
VFFGEFPLMTDRGTFVINGSEKVVVSQLVRSPGSYFKEEMNRKNGEMIYYADIIPSRGTW
LEFELDSKKALDNKVTNVFYVKIDKSRKTTATSLLTAFKMQKEEILDLFDNNEVISSSYE
LDTLTGDIEIDYENQVQEIYKKIRQGETATADGASKYLYGLLFDKRKYDLTKAGRFKLQQ
KLSVKNRLIGRVLAEDIIDVKGKVAFAKGTEITKDIFDDLDKVLEAGAMVQKINFNDAIT
SGNEIQKVKVFKDNDLRNETATIIGITKTSSDEFVNLPDIIATISYAINLMDGIGEIDDI
DHLGNRRVRTVGELLQNQFRIGMMRIEKNVREKLATSNPFKMKPSSIINNKPLTAIIGEF
FNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRDRAALEVRDVHPSHYGRICPIETPE
GPNIGLINNLSTYAKINEYGFIETPYRKVKNTKVISGEYEYLTADKEKDYVVAQANINLA
EDGTILDEQVVARYRGDDIMVSPEDVDYVDVSPKQIVSIATSCIPFLENDDANRALMGAN
MQRQAVPLINPESPIVGTGVEHEAARDSGDAIVATADGIVKYVDSKRVTIEQKDGIKTYD
LNDFSRSNNGTAITHLPIVKLGDKVKARDILADGPSMEKGELALGQNVVVAFTTWNGYNY
EDAVIVSERIVIDDRFTSIHIDEYTIERRQTKQGPEEITRDIPNISEVSKKYLDEDGIVA
IGSEVKVGDILVGKVTPKSQTQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVKSIK
RFSRADGHDLPADILEIIKVYIVQKRKIQEGDKMAGRHGNKGVISKILPVEDMPHMEDGT
PVDIMLNPQGVPSRMNIGQVLEIHLGMAAKKLGIKVNTPVFEGVKEQELQDIMEEAGMDN
YGKVTLVDGRTGEAFDKPISVGVMYMLKLSHMVDDKLHTRNIGPYSLITQQPLGGKAQNG
GQRFGEMEVWALEAYGAAYTLREILTIKSDDIKGRIKTYESIVRSKPIPKPGIPESFNVL
TKEIMGLGFDMHMIDEEGNKVQINAYDDDDEFEIDTELLDGDSSFNDADIKDYVETSEDD
EITFEEESIEE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacaaaattaaaaaaattaatgcgcttgtggaaagacgtgattatgcaaaagta
tcaggtgaccttgagttacccaaccttatcgaattacaaacagacacattcgaatgattt
aaacaaaagggaataaacgaagtgtttgaagaagtttttccagtagtttcagctgatggt
gacattgttttatcaatgactgattgagaatttagagaacctagactttcaattacaaaa
gctaaagaagagtcaaaaatatttgaagctcctatttactcaaacttatcattaactatt
cacatggaagatgtagaagtttttaaagaagagatttcgggatcaatggaaacattctta
aaaggatgattacaagaaaaattagaatcaactggtgttgaatttaaagatagtaaagga
tcactttacttttttgagttcaaaggtaaaactggtgaaaaagatacaattcaaattgaa
attaaagatgaaaaggatgaattctatctagcaaatattgacatatacaaaacaggagaa
gtcttctttggagaattcccattaatgacagatagaggaactttcgtaattaatggtagt
gaaaaagtagttgtttcacaactagttcgttcaccaggaagttactttaaagaagaaatg
aaccgtaaaaatggggaaatgatttattatgcagacattattccttcaagaggtacatga
ttagaatttgaattagattcaaaaaaagctttagataataaagttactaatgttttttat
gtaaaaattgataaatcaagaaaaacgactgccacaagtttattaacagccttcaaaatg
caaaaagaagaaattttagacttgtttgataataacgaagtaatctcatcaagttatgaa
ttagatactttaactggtgatattgaaatagattacgaaaaccaagttcaagaaatttat
aaaaaaattcgtcaaggtgaaactgcaacagctgatggagcaagtaaatacctatacgga
ttattatttgacaaaagaaaatatgatcttacaaaagcaggaagatttaaattgcaacaa
aagttatctgtaaaaaacagattaattggacgtgttcttgccgaagatataattgatgtt
aaaggtaaagttgcatttgcaaaaggaactgaaataacaaaagatatttttgatgatttg
gataaagttcttgaagctggagcgatggtacaaaaaattaactttaatgatgcaatcact
tcaggtaatgaaattcaaaaagttaaagtttttaaagacaatgatttaagaaacgaaact
gcaacaattataggtattacaaaaacatcaagtgatgaatttgtaaatttgccagatatt
attgcaaccatttcttatgcaattaacttaatggatggaataggtgaaattgatgatatc
gatcacttaggaaacagaagagttagaactgttggtgaattattacaaaaccaattcaga
attggtatgatgcgtattgaaaagaatgtaagagaaaaacttgcaacatcaaacccattc
aaaatgaaaccatcaagtattattaataacaaaccattaactgcaataattggagaattc
tttaatctttctcaattatcacaattcatggatcaaactaacccgttagctgaattaaca
aataaacgtagactaactgctttagggcctggtggtctaagtagagatagagctgctctt
gaagttcgtgacgttcacccgtctcactacggaagaatctgtccaattgaaactcctgag
ggaccaaacattggattgatcaacaacttatcaacttatgcaaaaattaacgaatatgga
tttattgaaactccatatagaaaagttaaaaatacaaaagttatctcaggtgagtatgaa
tacttaactgccgataaagaaaaagactatgtagttgctcaagcaaatatcaacttagca
gaagatggaacaattttagatgaacaagtagttgctcgttatagaggagatgacattatg
gtttctccagaagatgttgactatgttgacgtttcaccaaaacaaattgtttcaatcgct
acatcatgtattccgttcttagaaaatgatgacgccaaccgtgcacttatgggtgcgaac
atgcaacgtcaagctgtgcctttaattaatccagaatctccaatcgttggaactggtgtt
gaacatgaagctgcacgtgactcgggagatgccattgttgcaactgctgacggtattgtt
aaatatgttgactcaaaaagagttactattgaacaaaaagatggaattaaaacatatgat
ttaaacgactttagtcgttcaaataatggtactgctataactcacttgccaatcgtaaaa
ttgggagacaaagttaaagcaagagatatcttagctgatggtccttcaatggaaaaaggt
gaattggccttgggacaaaacgttgttgttgcctttacaacttgaaatggttacaactat
gaggatgctgttattgtttcagaacgtatcgtaattgacgatagatttacttctatccac
attgatgaatacacaatcgaaagaagacaaacaaaacaaggtcctgaagaaatcactaga
gacattccgaatatttcagaagtaagtaaaaaatacttagacgaagatggaattgtagct
attggatcagaagttaaagttggagatattttagtaggtaaagttactccaaaatcacaa
actcaattatcacctgaagataaattgttacacgcaatctttggtgaaaaatcaagaaat
gtaaaagataactcattaagagtaccaaatggtggagaaggaattgttaaatcaattaaa
cgtttctcaagagctgatggtcacgatttaccagcagatatcttagaaattattaaagtt
tacatcgttcaaaaacgtaaaattcaagagggagataaaatggctggacgtcatggtaac
aaaggtgttatctcaaaaatcttacctgttgaagacatgccacatatggaagacggaaca
ccagttgacattatgttaaacccacaaggggttccttcacgtatgaatattggacaagta
ttggaaatccacttaggtatggctgctaaaaaacttggaattaaagttaatacacctgtt
tttgaaggggttaaagaacaagaattacaagatattatggaagaagctggaatggataac
tatggaaaagttacattagttgatggaagaactggagaagcatttgataaaccaatttct
gttggggttatgtacatgctaaaactttctcacatggttgatgacaaactacatacaaga
aatatcggtccatactcattaattactcaacaaccgttaggtggaaaagcacaaaacggg
ggacaaagattcggggaaatggaagtttgagcacttgaagcttatggtgctgcttacaca
ttgcgtgaaatcttgactattaaatcagatgatattaaaggtcgtattaaaacttacgaa
tcaatcgttagatcaaaaccaattccaaaaccaggaattccagaatcatttaacgttctt
acaaaagaaattatgggtctaggatttgatatgcatatgatcgatgaagaaggaaataaa
gtacaaataaatgcttatgatgacgatgatgaatttgaaattgatacagaattattagat
ggtgattcatcatttaatgatgcagatatcaaagactacgttgaaacaagcgaagatgat
gaaattactttcgaagaagaaagtatagaagaataa
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