Sphingomonas morindae: LHA26_08020
Help
Entry
LHA26_08020 CDS
T08557
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smor
Sphingomonas morindae
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LHA26_08020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smor03019
]
LHA26_08020
03009 Ribosome biogenesis [BR:
smor03009
]
LHA26_08020
04131 Membrane trafficking [BR:
smor04131
]
LHA26_08020
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smor04147
]
LHA26_08020
Messenger RNA biogenesis [BR:
smor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LHA26_08020
Ribosome biogenesis [BR:
smor03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LHA26_08020
Membrane trafficking [BR:
smor04131
]
SNARE
SNARE associated proteins
Others
LHA26_08020
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LHA26_08020
Exosome [BR:
smor04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LHA26_08020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
AAA_33
CDC48_2
AAA_2
TIP49
IstB_IS21
AAA_14
AAA_28
NPHP3_N
nSTAND3
RNA_helicase
AAA_18
AAA_7
DUF815
AAA_30
AAA_3
Mg_chelatase
Sigma54_activat
AAA_24
ABC_tran
AAA_17
AAA_19
AAA_11
TsaE
Parvo_NS1
Zeta_toxin
NB-ARC
ATPase
bpMoxR
PhoH
Vps4_C
SLFN-g3_helicase
AAA_25
CPT
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
USI74383
LinkDB
All DBs
Position
1:complement(1648118..1650403)
Genome browser
AA seq
761 aa
AA seq
DB search
MADVDTSNEISSRRLQVANARPDDSGHGLARLPRAAMQALGLVEGDVVEIVGKRATPARA
VLPYPEDEGLDILRIDGLQRANAGVGSGDFVEVRRAESKPATRVVFAPAQENLRLQGSGQ
ALKRSFQMKPITAGDVVATTGQQRVTAEDLPPQLRQMLNRPAYSLQEIRLLVVSTTPKGV
VHIDQNTEVELRAEYQEPREARRADVTYDDLGGLGDTIDQVREMVELPLRYPELFERLGV
EPPKGVLLHGPPGTGKTRLARAVANESDAEFFHIAGPEIMGSAYGQSEQQLRDIFEQAAK
AAPSIVFIDEIDSIAPKRGQVQGEAEKRLVAQLLTLMDGLEKRANVVVIAATNRPEAIDE
ALRRPGRFDREIVIGVPDERGRREVLGIHTRGMPLGEGVDLKELARTTYGFVGADLAALA
REAAIEAVRRIMPRLDLHERTVPPEVLDELRVTREDFLTALKRVQPSAMREVMVQAPNVG
WDDVGGLDEARERLREGVELPLRHPDSFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREA
EANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAV
TERVVNTILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVSVPDEAGRRRI
LGIHTEAMPLAADVDLDALARRTERFTGADLEDLVRRAGLTALRRSLDTGMVEMADFEAG
LADSRASVTAEMERDYEQMAARLKQDALAIQPIGFVTPGSR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtcgacaccagcaatgaaatcagcagccgccggcttcaggtcgccaatgcg
cggccggacgatagcggccatggccttgcccgcctgccgcgcgcggcgatgcaggcgctt
ggcctggtcgagggcgatgtcgtcgaaattgtcggcaagcgggccacgccggcccgcgcg
gtgctgccctatcccgaggatgaggggctggacattctccgcatcgacggcctgcagcgc
gccaatgccggggtcggctcgggcgactttgtcgaggtccgccgcgccgagagcaagccc
gcgacgcgcgtggtgttcgcgccggcgcaggagaatctgcggctccagggctccggccag
gcgctcaagcgcagcttccagatgaagccgatcaccgccggcgatgtcgtcgccaccacc
ggccagcagcgcgtcacggccgaggatctgccgccgcagctgcgccagatgctcaaccgc
ccggcctattcgctccaggagatccggctgctggtcgtgtccaccacgcccaagggggtg
gtgcatatcgaccagaataccgaggtggagctgcgcgccgaatatcaggagccgcgcgag
gcgcggcgcgcggacgtgacctatgacgatctcggcggcctgggcgatacgatcgaccag
gtgcgcgagatggtggagctgccgctccgctatcccgaattgttcgagcggctgggcgtg
gagccgcccaagggcgtgctgctccacggtccgcccggcaccggcaagacccggctcgcg
cgcgcggtggcgaacgagagcgatgcggaattcttccacatcgcggggccggagatcatg
ggctccgcctatggccagagcgaacagcagctgcgcgacattttcgagcaggccgccaag
gcggcgccgtcgatcgtgttcatcgacgagatcgactcgatcgcgcccaaacgcggccag
gtccagggcgaggccgagaaacggctggtggcgcagctgctcacgctgatggacgggctg
gagaagcgcgccaatgtcgtggtgatcgcggcgaccaaccggcccgaggcgatcgacgag
gcgctgcggcgccccggccgcttcgatcgcgagatcgtgatcggcgtgcccgacgaacgc
ggccggcgcgaggtgctcggcatccacacgcgcggcatgccgctgggcgagggcgtggat
ctcaaggaactggcgcgcaccacctatggctttgtcggcgccgatctcgccgcgctggcg
cgcgaggcggcgatcgaggcggtgcgccggatcatgccgcggctcgatctgcacgagcgc
accgtgccgcccgaggtgctcgacgagctgcgcgtgacgcgggaggatttcctcaccgcg
ctcaagcgcgtccagccgtccgccatgcgcgaggtgatggtgcaggcgcccaatgtcggc
tgggacgatgtcggcgggctggacgaggcgcgcgagcggctgcgcgagggggtggaattg
ccgctgcgccatccggacagtttccgccggctcggcatccgccccgccaagggctttctg
ctctacgggccgcccggcaccggcaagaccttgctcgccaaggccgtggcgcgcgaggcg
gaggcgaatttcatcgccaccaaatcctcggacctgctcagcaaatggtatggcgaaagc
gagcagcagatcgcccggctgttcgcccgcgcccgccaggtggcgccgacggtaatcttc
atcgacgagctggacagcctggtgccggcgcggggcggcgggctgggcgagccggcggtg
accgaacgtgtcgtcaacacgatcctcgccgagatggacgggctggaggagctgcagtcg
gtggtggtgatcggcgccaccaaccggcccaatctgatcgatccggcgctgctgcggccg
gggcggttcgacgagctggtgtatgtgtcggtgccggacgaggccgggcgccggcgcatc
ctcggcatccacaccgaagcgatgccgcttgccgccgatgtcgatctcgacgcgctggcc
cggcggaccgagcgcttcaccggcgccgatctcgaggatctggtgcgccgcgccgggctc
accgctctgcgccggtcgctcgacacgggcatggtcgagatggccgatttcgaggcgggg
ctggcggacagccgcgcctcggtgacggccgagatggagcgcgactatgagcagatggcg
gcgcggctgaagcaggatgcgctcgccatccagccgatcggcttcgtcacgcccggctcg
cgctga
DBGET
integrated database retrieval system
