KEGG   Sphingomonas morindae: LHA26_10560
Entry
LHA26_10560       CDS       T08557                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
smor  Sphingomonas morindae
Pathway
smor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LHA26_10560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smor03019]
    LHA26_10560
Messenger RNA biogenesis [BR:smor03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LHA26_10560
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL RNase_J_C Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: USI74549
UniProt: A0ABY4XCE6
LinkDB
Position
1:2147251..2148831
AA seq 526 aa
MNVNLYGTQGKWLMADLGVSFADPNYPGIDVVLPDLGFIEERSADLLGLVITHGHEDHIG
AIPYLALDLGCPIYATAFTAGLIRAKLDEEGLADRVKVKLVKVGQPVKIGPFAVEWVPMA
HSIPEMNALLIETKHGRVFHTGDWKLDETPVIGQPSGEAALRAIGDRGVLALMGDSTNVF
NNEASGSEASVKADLEREIAAAPGRVLVTTFASNVARLQTLGQVAVATGRQLCVAGRSLD
RITKIARAVGYLPDFPPTVDFDSAMRLKPRELMIVATGGQGEARAALSRIAHGSHRLALS
EGDTVLFSSKQIPGNEEAIGIVQNALAKRNIRMVTERQAHIHVSGHPGRPEIERLYGWLK
PEIVVPVHGERRHMAEHARLAAALGVPASIVQSNGDVVRLAPNGPKIIGHERSGRLVLDG
DVILPADGTTLNDRRKLAANGLVTVGVAVDKAGHPRGRPQIGIHGLPVEEDRADFIEDAA
EAVLDALTDAPRDEAKKRDAVRLAVRRRATAWTGKKPIVEVLLLRV
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgaacgtcaatctctacggcacccagggcaaatggctgatggccgatctgggcgtcagc
ttcgcggatccgaactatcccggcatcgacgtggtgctgcccgatctcggcttcatcgag
gagcgcagcgccgatcttctcggcctggtcatcacccatggccatgaggatcatatcggc
gccatcccctatctcgcgctcgatctcggctgccccatctacgccaccgccttcaccgcg
gggctgatccgcgccaagctggacgaggaggggctggcggatcgcgtcaaggtcaagctc
gtcaaggtcggccagccggtcaagatcgggccgttcgcggtggaatgggtgccgatggcg
cattcgatccccgagatgaacgcgctgctgatcgagaccaagcatggccgcgtcttccac
accggcgactggaagctggacgagaccccggtgatcggccagccctccggcgaggccgcg
ctgcgcgcgatcggcgatcgcggcgtgctcgcgctgatgggcgattccaccaatgtcttc
aacaatgaggcgtccggctcggaagccagtgtgaaggccgatctggagcgcgagatcgcc
gccgcgcccggccgggtgctggtgacgaccttcgcctccaacgtggcgcggctgcagacc
ttgggccaggtggcggtggcgacggggcggcagctctgcgtcgccggccgctcgctggac
cgcatcaccaagatcgcgcgcgccgtcggctatctgcccgatttcccgccgaccgtggat
ttcgactcggcgatgcggctgaagccgcgcgagctgatgatcgtcgccaccggcggtcag
ggcgaggcgcgggcggcgctgtcgcgcatcgcccatggcagccaccggctcgcgctcagc
gagggggacacggtgctcttctcctccaagcagatccccggcaatgaggaggcgatcggc
atcgtccagaatgcgctggccaagcgcaacatccggatggtgacggagcgccaggcgcat
atccacgtctccggccatcccggacggcccgagatcgagcgcctctatggctggctcaag
cccgagatcgtggtgcccgtgcatggcgagcgccggcacatggccgaacatgcccggctc
gcggccgcgctcggcgtccccgcctcgatcgtgcagagcaatggcgatgtcgtgcggctc
gcacccaacgggcccaaaatcatcggccatgagcggtcgggccggctggtgctcgatggc
gacgtgatcctgccggcggacggcaccacgctcaacgatcgccgcaagctcgccgccaac
ggtctggtgacggtgggcgtggcggtggacaaggcgggccatccgcgtgggcggccgcag
atcggcatccacggcctgcccgtggaggaggaccgcgccgactttatcgaggatgccgcc
gaggcggtgctcgacgcgctcaccgacgccccgcgcgacgaggccaagaagcgggacgcg
gtgcggctggcggtgcgccggcgcgccaccgcctggacgggcaagaagccgatcgtcgag
gtgctgctgctgcgcgtgtga

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