Sphingomonas morindae: LHA26_10560
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Entry
LHA26_10560 CDS
T08557
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smor
Sphingomonas morindae
Pathway
smor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA26_10560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smor03019
]
LHA26_10560
Messenger RNA biogenesis [BR:
smor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LHA26_10560
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
USI74549
UniProt:
A0ABY4XCE6
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All DBs
Position
1:2147251..2148831
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AA seq
526 aa
AA seq
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MNVNLYGTQGKWLMADLGVSFADPNYPGIDVVLPDLGFIEERSADLLGLVITHGHEDHIG
AIPYLALDLGCPIYATAFTAGLIRAKLDEEGLADRVKVKLVKVGQPVKIGPFAVEWVPMA
HSIPEMNALLIETKHGRVFHTGDWKLDETPVIGQPSGEAALRAIGDRGVLALMGDSTNVF
NNEASGSEASVKADLEREIAAAPGRVLVTTFASNVARLQTLGQVAVATGRQLCVAGRSLD
RITKIARAVGYLPDFPPTVDFDSAMRLKPRELMIVATGGQGEARAALSRIAHGSHRLALS
EGDTVLFSSKQIPGNEEAIGIVQNALAKRNIRMVTERQAHIHVSGHPGRPEIERLYGWLK
PEIVVPVHGERRHMAEHARLAAALGVPASIVQSNGDVVRLAPNGPKIIGHERSGRLVLDG
DVILPADGTTLNDRRKLAANGLVTVGVAVDKAGHPRGRPQIGIHGLPVEEDRADFIEDAA
EAVLDALTDAPRDEAKKRDAVRLAVRRRATAWTGKKPIVEVLLLRV
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcaatctctacggcacccagggcaaatggctgatggccgatctgggcgtcagc
ttcgcggatccgaactatcccggcatcgacgtggtgctgcccgatctcggcttcatcgag
gagcgcagcgccgatcttctcggcctggtcatcacccatggccatgaggatcatatcggc
gccatcccctatctcgcgctcgatctcggctgccccatctacgccaccgccttcaccgcg
gggctgatccgcgccaagctggacgaggaggggctggcggatcgcgtcaaggtcaagctc
gtcaaggtcggccagccggtcaagatcgggccgttcgcggtggaatgggtgccgatggcg
cattcgatccccgagatgaacgcgctgctgatcgagaccaagcatggccgcgtcttccac
accggcgactggaagctggacgagaccccggtgatcggccagccctccggcgaggccgcg
ctgcgcgcgatcggcgatcgcggcgtgctcgcgctgatgggcgattccaccaatgtcttc
aacaatgaggcgtccggctcggaagccagtgtgaaggccgatctggagcgcgagatcgcc
gccgcgcccggccgggtgctggtgacgaccttcgcctccaacgtggcgcggctgcagacc
ttgggccaggtggcggtggcgacggggcggcagctctgcgtcgccggccgctcgctggac
cgcatcaccaagatcgcgcgcgccgtcggctatctgcccgatttcccgccgaccgtggat
ttcgactcggcgatgcggctgaagccgcgcgagctgatgatcgtcgccaccggcggtcag
ggcgaggcgcgggcggcgctgtcgcgcatcgcccatggcagccaccggctcgcgctcagc
gagggggacacggtgctcttctcctccaagcagatccccggcaatgaggaggcgatcggc
atcgtccagaatgcgctggccaagcgcaacatccggatggtgacggagcgccaggcgcat
atccacgtctccggccatcccggacggcccgagatcgagcgcctctatggctggctcaag
cccgagatcgtggtgcccgtgcatggcgagcgccggcacatggccgaacatgcccggctc
gcggccgcgctcggcgtccccgcctcgatcgtgcagagcaatggcgatgtcgtgcggctc
gcacccaacgggcccaaaatcatcggccatgagcggtcgggccggctggtgctcgatggc
gacgtgatcctgccggcggacggcaccacgctcaacgatcgccgcaagctcgccgccaac
ggtctggtgacggtgggcgtggcggtggacaaggcgggccatccgcgtgggcggccgcag
atcggcatccacggcctgcccgtggaggaggaccgcgccgactttatcgaggatgccgcc
gaggcggtgctcgacgcgctcaccgacgccccgcgcgacgaggccaagaagcgggacgcg
gtgcggctggcggtgcgccggcgcgccaccgcctggacgggcaagaagccgatcgtcgag
gtgctgctgctgcgcgtgtga
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