Sphingomonas morindae: LHA26_12120
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Entry
LHA26_12120 CDS
T08557
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
smor
Sphingomonas morindae
Pathway
smor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LHA26_12120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smor03400
]
LHA26_12120
Enzymes [BR:
smor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LHA26_12120
DNA repair and recombination proteins [BR:
smor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LHA26_12120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
USI72049
LinkDB
All DBs
Position
1:complement(2472036..2473439)
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AA seq
467 aa
AA seq
DB search
MALVRLAADDDVEGWRAAARGLALAGVPADAVHWQVGDGPADLFADAEPGVPPPAPGAEA
FSVPRRFVELAETALLHADPERFARLYALLLRLRDQPRAIEDRADPLIRTIEDMAKAVRR
DMHKMHAFLRFRAVEEAEGERFVAWYEPEHHIVRANAGFFVRRFSTLRWSILTPQLSLHW
DGISLAEGPPGQRGDAPDADPAEAAWKTYYASIFNPARLKTAAMLREMPKKYWKNMPEAA
LVPALVADAQRREREMIMTAQTSPAGNATLALEALREEAAQCRRCPLWKPATQTVFGEGP
AGAPLMFVGEQPGDQEDLAGHPFVGPAGQLFDRALGDAGVDRSRAYVTNAVKHFKFEPRG
KRRIHAKPDSGEIEACRWWIEQERDIVRPALTVALGVTAAQSLTGRSITISRARGAPVRL
ADGGECWITVHPSFLLRIPEADRKAEEYARFVDDLRRIGARLAELTG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggttcggctggccgccgacgacgatgtcgagggctggcgggcggcggcgcgc
gggctcgcgctcgcgggcgtgccggcggacgcggtgcactggcaggtgggcgatggcccg
gccgatctgttcgcggacgccgagccgggcgtgccgccccccgcgcccggcgccgaggcc
ttttcggtgccgcggcgcttcgtcgagctggcggagacggcgctgctccatgccgatccg
gaacgcttcgcccggctttacgcgctgctgctgcggctgcgcgaccagccgcgcgccatc
gaggaccgcgccgatccgctgatccgcacgatcgaggacatggccaaggcggtgcggcgc
gacatgcacaagatgcacgcctttctccgcttccgcgcggtggaggaagcggagggcgag
cggttcgtggcctggtacgagcccgagcatcacatcgtgcgcgccaatgccggcttcttc
gtccgtcgcttcagcacgctgcgctggtcgatcctgacgccgcagctcagcctgcactgg
gatggcatcagcctcgccgaggggccgccggggcagcgtggcgacgcgcccgatgccgat
cccgccgaggccgcctggaagacctattacgcctccatcttcaacccggcgcggctgaag
actgccgccatgctgcgggaaatgccgaagaagtactggaaaaacatgcccgaggcggcg
ttggtcccggcgctggtggccgacgcccagcgccgcgaacgggagatgatcatgaccgcc
cagaccagcccggcgggcaacgccacgctcgcgctcgaggcgctgcgcgaggaggcggcc
cagtgccggcgctgccccttgtggaagccggccacgcagaccgtgttcggcgagggaccg
gccggcgcgccgctgatgttcgtgggcgagcagcccggcgatcaggaggatctggcgggc
cacccctttgtcgggccggccggccagctgttcgatcgcgcgctcggcgacgccggggtg
gaccgcagccgcgcctatgtcaccaatgcggtcaagcacttcaagttcgagccgcgcggc
aagcggcgcatccacgccaaacccgacagcggcgagatcgaggcctgccgctggtggatc
gagcaggagcgcgacatcgtccgccccgcgctcacggtcgcgctcggggtcaccgccgcc
cagtcgctcaccgggcgctcgatcaccatttcgcgggcgcggggggcgccggtgcggctg
gcggatggcggcgaatgctggatcaccgtgcatccgagctttttgctgcgcatccccgag
gcggaccgcaaggccgaggaatatgcgcgcttcgtggacgatctccgccgcatcggcgcg
cggctggccgagctgaccggctga
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