Sphingomonas morindae: LHA26_15215
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Entry
LHA26_15215 CDS
T08557
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smor
Sphingomonas morindae
Pathway
smor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA26_15215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smor03019
]
LHA26_15215
Enzymes [BR:
smor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHA26_15215
Messenger RNA biogenesis [BR:
smor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHA26_15215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USI72615
LinkDB
All DBs
Position
1:3122179..3123642
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AA seq
487 aa
AA seq
DB search
MTKFSELGLAAPIQAALDAEGYHTPTPIQAQAIPPLLEGRDLLGIAQTGTGKTAAFSLPA
LHHLAGAPKHRQAHGCRMLVLAPTRELASQIAESMRAYGANLKLSVATIFGGVPINRQIR
QLQHGVDILVATPGRLLDLVDQRALTLRHVEIFVLDEADQMLDLGFIHALRRIVPLLPRQ
RQSLFFSATMPKTIGELADKFLTDPVKVAVAPVATTAERVDQYLTYVNQAEKQALLTIKL
REGQAKQEIGRALVFSRTKHGADRIVRHLAAADIAAGAIHGNKSQPQRERTLAAFRSGET
PILVATDIAARGIDVDGVTHVFNFDIPDVPEQYVHRIGRTARAGAAGVALAFVSPDERGN
MRDIEKLTRVKPVELPLPENFLAEQKRLPAPKLASRDDRERDALGSRGRNDGRGAGARRG
ARPQEAAPKRAPGTGGLAKPAGGRGHSGRPQPGGWNPVDGAAGDGAGARRRPRRRGGSGG
ARPASQG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaattttccgaactcggcctcgccgcccccatccaggccgcgctcgacgccgaa
ggctatcacacgccgacgccgatccaggcgcaggccattccgccgctgctcgaaggccgg
gatcttctcggcatcgcccagacgggcaccggcaagacggcggcgttctcgctgcccgcg
ctgcaccatctcgccggcgcgcccaagcatcgccaggcccatggctgccggatgctggtg
ctggcgccgacgcgcgagctggccagccagatcgccgagagcatgcgcgcctatggcgcc
aatctgaagctcagcgtcgccaccatcttcggcggcgtgccgatcaaccggcagatccgc
cagctccagcatggcgtggacattctggtggcgacgccgggccggctgctcgacctggtc
gaccagcgcgcgctgacgcttcgccatgtcgagatcttcgtgctcgacgaggccgaccag
atgctcgatctcggcttcatccacgcgctgcgccggatcgtgccgctgctgccgcgtcag
cgtcagtcgctcttcttctcggccaccatgcccaagacgatcggcgagcttgccgacaaa
ttcctcaccgatccggtcaaggtggcggtggcgccggtcgccaccaccgccgagcgggtg
gatcagtatctcacctatgtgaaccaggccgagaagcaggcgctgctcacgatcaagctg
cgcgagggccaggcgaagcaggagattggccgcgcgctcgtcttcagccgcaccaagcat
ggcgcggaccgcatcgtccgccacctcgccgccgccgatatcgccgccggcgcgatccac
ggcaataagagccagccgcagcgcgagcgcacgctcgcggccttccgctccggcgaaacg
ccgatcctcgtcgccaccgatatcgccgcgcgcggcatcgatgtggatggcgtcacccat
gtcttcaatttcgacattcccgatgtgccggagcaatatgtccaccggatcggccgcacc
gcgcgggccggggcggcgggcgtggcgctggccttcgtctcgccggacgagcggggcaat
atgcgcgacatcgagaagctgacccgcgtcaagccggtcgagctgccgctgcccgagaat
ttcctcgccgaacagaagcgcctgccggcgcccaagctggcgagccgtgacgatcgcgaa
cgcgatgcgctgggcagccgtggccgcaatgacgggcgcggcgccggcgcgcggcgcggg
gcgcgtccgcaggaggcggcgcccaagcgcgcgccgggcaccggcggcctcgccaagccg
gcgggcgggcgcggccattcgggccgtcctcagccgggcgggtggaacccggtggatggc
gccgccggcgacggcgccggcgcgcggcggcgtccgcgtcgtcgtggcggcagcggcggc
gcgcgtccggccagccagggctaa
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