Sordaria macrospora: 10801475
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Entry
10801475 CDS
T01610
Symbol
SMAC4_08123
Name
(RefSeq) uncharacterized protein
KO
K10756
replication factor C subunit 3/5
Organism
smp
Sordaria macrospora
Pathway
smp03030
DNA replication
smp03410
Base excision repair
smp03420
Nucleotide excision repair
smp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
10801475 (SMAC4_08123)
03410 Base excision repair
10801475 (SMAC4_08123)
03420 Nucleotide excision repair
10801475 (SMAC4_08123)
03430 Mismatch repair
10801475 (SMAC4_08123)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smp03032
]
10801475 (SMAC4_08123)
03036 Chromosome and associated proteins [BR:
smp03036
]
10801475 (SMAC4_08123)
03400 DNA repair and recombination proteins [BR:
smp03400
]
10801475 (SMAC4_08123)
DNA replication proteins [BR:
smp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
10801475 (SMAC4_08123)
DNA Replication Termination Factors
ELG1-RFC complex
10801475 (SMAC4_08123)
Chromosome and associated proteins [BR:
smp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
10801475 (SMAC4_08123)
DNA repair and recombination proteins [BR:
smp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
10801475 (SMAC4_08123)
Check point factors
HRAD17(Rad24)-RFC complex
10801475 (SMAC4_08123)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_assoc_2
RCF1-5-like_lid
AAA_22
AAA_16
AAA_30
AAA_24
AAA_11
DUF815
AAA_5
AAA_19
AAA_3
RuvB_N
AAA_14
DEAD
ResIII
AAA_28
SLFN-g3_helicase
AAA_7
DNAX_ATPase_lid
AAA_18
Mg_chelatase
ATPase_2
bpMoxR
TniB
TAFII28
RNA_helicase
AAA_25
nSTAND3
ABC_tran
VTC
Motif
Other DBs
NCBI-GeneID:
10801475
NCBI-ProteinID:
XP_003344190
UniProt:
F7VQ48
LinkDB
All DBs
Position
5:join(3942031..3942164,3942225..3942868,3942925..3943316)
Genome browser
AA seq
389 aa
AA seq
DB search
MSDFEDEMDIDVPVSKDIMFAATNTAKGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGH
QDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRG
IDVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTA
NTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVIEEENVQIMPDATDALVK
LSKGDMRRALNVLQACHASSTPLQPKDGPKVAEKDIVRETITIQTIYNCVAAPPPDAIKK
ILSTLLSTSDVTTCLSTINTLKISQGLALADIITALSEEIVKLEVKPQVMITWLDALANI
EHRVASGAGEMIQTGAVVGAIRNGVELMG
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactttgaggatgaaatggacattgatgtcccagtgtccaaggacatcatgttc
gctgccaccaacacagcaaagggcaagcgaagcgccgccaacctgcccgtcgaagcagaa
gacagccttccatgggtcgaaaagtaccgccccgtttcgctcgccgatgtgtctggtcac
caagacatcctcgcaaccatcaacaaattcgtcgactcgaaccggctcccccatttactt
ctctacggtcctcccggaaccggtaaaacatccaccattctcgcccttgcccgacgaatc
tatggcaccgccaacatgcgccagatggtgctcgagttgaacgcctccgacgaccgtggt
atcgacgttgtgcgcgagcagatcaagacctttgcctccaccaagcagatcttcaccctc
ggttcctctgcttcgcgatcgggtctggctggcttcaagctcatcattctcgacgaggcc
gatgccatgacctccacagctcagatggcccttcgtcgcatcatggaaaagtacacggcc
aacactcgcttctgcatcattgccaactactcccacaagctcagcccggcccttctgtcg
agatgcacaaggttccgtttcagccctctaaaagagaaggatattcgtgttttggtagac
aaggtcattgaggaggagaacgtccagatcatgccagacgctaccgatgcgctggtcaag
ttgagcaagggtgatatgcgtcgtgcgctgaacgtgctacaagcctgccatgcatcaagc
acaccactccaaccaaaggacggccccaaggtcgccgaaaaggacattgtacgggaaacc
atcactatccaaaccatctacaactgcgtcgccgcgccaccacccgacgccatcaaaaag
attctcagcacccttctcagcacaagcgatgtcacgacatgtctgtccacaatcaacaca
ttgaagatctcacaaggcttggcacttgccgacatcattaccgctctgtctgaggagatc
gtcaagctagaagtcaagccccaggtgatgatcacatggcttgatgctcttgcgaatatt
gagcatcgagtagcgagcggagcaggagagatgatccagactggcgcggtagtgggtgcg
atacggaacggtgtcgagttgatgggttga
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