Sordaria macrospora: 10801830
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Entry
10801830 CDS
T01610
Symbol
SMAC4_07544
Name
(RefSeq) uncharacterized protein
KO
K18748
protein SSD1
Organism
smp
Sordaria macrospora
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smp03019
]
10801830 (SMAC4_07544)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
10801830 (SMAC4_07544)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
DUF6024
DUF5774
Motif
Other DBs
NCBI-GeneID:
10801830
NCBI-ProteinID:
XP_024511253
LinkDB
All DBs
Position
2:complement(join(5079649..5079688,5079745..5083654,5083878..5084001))
Genome browser
AA seq
1357 aa
AA seq
DB search
MDQQQQPQGGVPGPTGRRLHIAHRRSPSELTPLMSMFSNTNMEQLAIQQQIELLQQQQQQ
ITAQYANLGMLPATQPLGPGGFTNFQPIAGLAPQAGFQFPVQLQQQPSLAPPTQPLSHRR
NQSAIPNMGMGGPPPAPSAGASGSTFGNFQDPTQGHARENSTGGRGGRGGSGGGHQRRHS
LALADAKKAAEIAQQKRTTSTFQFPAAPASGSSEKSEDDAKTTPSATPAPAEGQIAQGSS
FRGGRGGHGRSQSMAVGANGRGGRGGHFSTDSMGQGSDFSRRGGGHARTGSRNFDGNWRN
QNQNQAQDQTASIPQNQGFQPGHRSRGSVSQSISSIGSFQYPGQPQLVQFPGQMMMPQVF
PGQQLNPMQLNQLQALQLAQMNGQPLTGLAASQHAPQMAAPGQQSQQQQRKTLFTPYLPQ
ATLPALLGNGQLVSGILRVNKKNRSDAYVSTQDGLLPADIFICGSKDRNRALEGDLVAVE
LLDVGEVWAQKREKEEKKKRKDITDTRSGSISGGQNTGDDNGNAEGGLRRRGSLRQRPTQ
KKNDDVEVEGQSLLLVEEEEINDEQQPLFAGHIVAVIERVPGQMFSGTLGLLRPSSQATK
EKQEAERAARDGGNGRQQDSRSHEKPKIVWFKPTDKRVPLIAIPTEQAPKDFVEKHQDYA
DQIFVACIKRWPITSLHPFGTLVEKLGKMGDLKVETDALLRDNNFASDEFAEAVLRNVSQ
QDWSLESEDQAALATRRDFRGENVFTVELDGSVELGNGVHFKQLPDGKIEIGIHVPDVAH
FVKPGSLVDREAKKRGTAVHLVNRFCALLPPKLSSELCTLTPEQDRLTFSVVFHVNPQTG
AVAEGDTWIGKGIVKSGGKVSLNQIDEALSGSSGFSHPSVKAMDIQILNAVAQKFREARL
GAGGEPIAPLRLLQQLDDENIPPKHNIFESSQATELVEELMHKANTYVAQRLAQGLPEKA
LLRRQSAPNSRRLQTIVDRMTALSYDIDATSSGTLQNSLFKIDDSDIRKGMETLLVKSMQ
RAKYFIAGKTASLLWPHYALNLPLYTHFTYPTRRYADIIVHRQLEAVLSDGKIEYTEDLE
NLVKTVEACNTKKDSAQNAQEQSVHIESCRTMDKKRQEVNGDLISEGIVICVYESAFDVL
IPEWGFEKRVHCDQLPLKKAEFRKEKRVLELYWEKGVPSSAYVPEDERPKAAASQRISNA
LAAARQAEEADRAKKEREETARKQIETGTVSHDDVDALFEDEDDIEDNASDITEAMAGAS
LAERPTQSVPGSPTQSAAEAVGTLHRTRSDSKVPVGDTPEARLTNKEKYLKLFKLREEGG
EYIQDVTEMTRVPVILKTDLSKSPPCLTIRSLNPYAL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcaacagcagcctcaaggaggcgtccctggtcccaccggccgacggctccat
atcgcccaccgaagaagcccttcggagctgaccccgttgatgagtatgttctcgaacacg
aacatggaacagcttgccatccagcagcagatcgaactccttcagcagcagcaacagcag
attacagctcaatatgccaacctcggtatgcttccggccacccagcccctgggccctggc
gggttcaccaacttccagcccattgctggtttggcgccccaggcgggcttccagttcccg
gttcagctccagcagcagccgtccctagctcctcctacacaaccactctcacatcgccgt
aatcagtcggccattccaaacatgggcatggggggcccgccgcctgctccttctgccggt
gcctctggttcgactttcggcaacttccaggatcctacccagggtcacgcccgagagaac
agtaccggcggtcgtggcggtcgtggcggttccggcggtggccatcagagaagacattcc
ttggccctggccgatgcgaagaaggccgccgagatcgcccaacagaagcgtacgacctct
accttccagttccctgctgctcctgcctcgggctcctccgagaagtctgaggatgatgcc
aagaccaccccaagcgctacgcctgctccggccgagggccagatagctcagggctcgtcc
ttccgtggcggccgtggcggccacggtaggagccagagcatggctgttggcgccaatggc
cgtggtggccgcggaggccatttctctactgactctatgggccaaggcagcgacttctct
cgccgtggtggtggccatgcccgcactggttcccgcaacttcgacggcaactggaggaac
cagaaccagaaccaggctcaggaccagaccgcttccattcctcagaaccagggcttccag
cccggtcatcgcagccgcggctctgtgagccagtccatctcctccattggatctttccag
taccctggacagcctcagctggtccagttccctggccagatgatgatgccccaggttttc
cctggccagcaactcaacccgatgcagctcaaccagcttcaggctcttcagcttgctcag
atgaatggccagccacttactggtcttgccgccagccagcacgccccccaaatggctgct
cctggtcagcaaagccagcaacaacagcgcaagacgcttttcactccttaccttccccaa
gctactcttcccgccctcttgggtaacggtcagcttgtttctggtattcttcgcgtgaac
aagaagaacagaagcgatgcctacgtctcgacccaggacggcctgcttcccgccgacatc
ttcatttgcggcagcaaggaccgcaaccgtgctctcgaaggtgatctcgttgcggtcgag
ttgttggatgttggtgaagtgtgggcgcaaaagcgtgagaaggaagaaaagaagaagcgc
aaggatatcaccgacactcgttccggctccattagcggaggccaaaacactggtgacgac
aacggcaacgctgagggaggcctccgccgccgtggcagtctcagacagcgtcctacccag
aagaagaatgacgacgtcgaagtcgagggtcagagtcttcttttggtggaggaagaggag
atcaatgatgagcagcagcccctcttcgctggccacatcgttgccgtcattgagcgcgtt
ccaggccagatgttctctggcaccttgggtctgctccgcccgagcagccaggctaccaag
gagaagcaggaagccgaacgcgctgcgagagacggtggcaatggccgccaacaagactcg
cgctcccacgagaagcccaagattgtttggttcaagcccactgacaagcgcgttcctttg
attgccatccccaccgagcaagcccccaaggacttcgtggagaagcaccaggactatgcg
gaccagatcttcgtggcttgcatcaagcgctggcccatcacttctctgcatcctttcggt
actctcgttgagaagctgggcaagatgggtgatcttaaggttgagaccgacgccctcctt
cgtgacaacaacttcgcgtccgacgagtttgctgaggccgttttgcgcaacgtcagccag
caagactggtcgcttgagagtgaggatcaagctgctcttgccactcgccgtgacttccgt
ggcgagaatgtgttcactgttgagttggatggctctgtcgagcttggcaacggtgttcat
ttcaagcagttgcctgatggtaagatcgagatcggtattcatgttcccgatgtcgcccac
ttcgttaagcccggttcactcgttgaccgtgaagccaagaagcgcggcactgcggtccat
ctcgtcaaccgcttctgtgcccttcttccccccaagctgtcgagcgagctttgcaccctc
actcctgaacaggatcgcttgaccttcagcgttgtgttccacgtcaacccccagactggt
gccgtggctgaaggcgacacttggattggaaagggtatcgtcaagagcggcggaaaggtg
tcgcttaaccagatcgatgaagccctttctggtagcagtggattctcgcatccgtccgtg
aaggctatggatatccagattcttaacgctgtcgctcagaagttccgcgaagctcgcttg
ggtgccggtggcgagcccattgcgcctcttcgtctccttcagcagcttgatgatgagaac
atcccgcctaagcacaacattttcgagtctagccaggccaccgagcttgttgaagagctt
atgcacaaggccaacacgtatgttgcccagcgccttgcgcagggacttccggagaaggct
cttctgcgcagacagtctgcacccaactctcgccgtctgcaaactatcgttgatcgcatg
actgctttgagctatgacattgatgccaccagcagcggtaccctacagaacagcttgttc
aagattgacgattctgacatcaggaagggtatggagaccctcctcgtcaagtccatgcag
cgcgccaagtacttcattgctggcaagactgccagtcttctttggcctcactatgccttg
aacttgcccctctacactcatttcacttaccccactaggcgctacgccgatatcattgtc
catcgtcagcttgaggctgtcctttccgatggaaagattgaatatactgaggacttggag
aaccttgtcaagaccgtcgaggcttgcaacaccaagaaagactcagctcaaaacgctcag
gaacagagcgttcacattgagtcctgccgcactatggataagaagcgtcaggaggtcaat
ggtgacctgattagcgagggtatcgtcatctgtgtgtacgagtctgcctttgacgttctc
attcccgagtggggcttcgagaagcgcgtccactgcgatcagcttcctttgaagaaggcc
gagttcagaaaagagaagagagttctcgaactttactgggagaagggcgttcccagctcc
gcctatgtccccgaagatgagcgtcccaaggctgctgcttctcagcgcatctcgaatgct
ctcgctgcggctcgtcaggccgaagaggctgaccgcgccaagaaggagcgcgaggagact
gcgcgcaagcagatcgaaactggtaccgtctcgcacgatgatgttgacgctctgttcgaa
gatgaggacgacatcgaggacaatgcctctgatatcaccgaggctatggccggcgcatct
cttgcggagcgcccgactcagagcgtgcccggttcccctactcagtctgcggctgaggct
gtcggtaccctccaccgtacccggtccgactcgaaggtgcctgtcggtgacacgcctgag
gctcgcttgaccaacaaggagaagtacttgaagctcttcaagctccgcgaggagggtggc
gagtacatccaggatgtgacggagatgacccgtgtgcctgtcattctcaagaccgacctc
tccaagagcccaccgtgtctcactatccgctcgctcaacccctatgccctctaa
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