Sordaria macrospora: 10803729
Help
Entry
10803729 CDS
T01610
Symbol
SMAC4_07821
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
smp
Sordaria macrospora
Pathway
smp03013
Nucleocytoplasmic transport
smp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
10803729 (SMAC4_07821)
03015 mRNA surveillance pathway
10803729 (SMAC4_07821)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smp03019
]
10803729 (SMAC4_07821)
Enzymes [BR:
smp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
10803729 (SMAC4_07821)
5.6.2.5 RNA 5'-3' helicase
10803729 (SMAC4_07821)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
10803729 (SMAC4_07821)
mRNA cycle factors
Common to processing body (P body) and stress granule
10803729 (SMAC4_07821)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
Viral_helicase1
SLFN-g3_helicase
PIF1
nSTAND3
AAA_22
SRP54
ATPase
PhoH
AAA_16
AAA_10
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
10803729
NCBI-ProteinID:
XP_003346344
UniProt:
F7VZ57
LinkDB
All DBs
Position
2:1083381..1086662
Genome browser
AA seq
1093 aa
AA seq
DB search
MANMEVSFTHLGNHLVSDSAAAIKAGGSDELSNIDPDENLLLGVYGGRGPRGNARRRHDD
DDNETEVLDDDDDESLASVPVDGMKSLKLDAPVEEKELPPHACAYCGIHSPSSVVKCLAC
NKWFCSAKGSGFSSHIVNHLVRARHKEVQLHPESSLGDTVLECYNCGTKNVFILGFIPAK
SDTVVVLLCRQPCGASTSTKDMSWDISRWQPLIEDRAFLSWLVTPPTDAEQLRARHLTPP
MIAKLEEMWKEAPNATVADLEKSAGVDDDPHPVLLKYDDPYHYQNIFGPLVKMESDYDKK
LKEAQSEDGLQVRWHLGLNSKHVASFILPKIESGDVKLAVGDEMRLKYKGELRPPWEGVG
YVIKIPNNQSDEVEVELRKSANDKSVPTECTHNFSADYVWKATSYDRMQLAMKTFAVDEM
SVSGYIFHKLLGHEVQVAPTKITMPKKFHVPGLPELNASQIAAIKQVLSNPLSLIQGPPG
TGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESS
VSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCC
TCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKA
AKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYDGSLQNGVTAAERLRKDV
DFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITP
YEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKEFIVLSCVRSNENQGIGFLSD
PRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCLVEGPLTNLQPSLLQFGR
PRQAYRPQRSHTQHVASGASNGRYVAPLTAGSVRDYETGSMISYIPDDVSSIHSSALGGA
GLSSAYPTMFSNFHPEAWPGLPGAGPNGRPGAKGRGRATESIAGESVANSEFTDATSSVI
GSKGIGQGGASLGAGLSEAIGSARPTSYSQSDRLKQYVESNGRMGVGNGYRRYDDDEKSV
STAFASQIGTGFD
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggccaacatggaggtgtccttcacacatcttggaaaccacctggtttccgattctgct
gccgccatcaaggccggtggctccgacgagctttccaatatcgatcccgatgaaaacctt
ctccttggtgtctacggtggacgtggtccccgtggcaacgccagacgccgccacgatgac
gacgacaacgaaaccgaggtcctcgacgacgatgacgacgagagtttggccagcgttccg
gtcgacggcatgaagagcctcaagctggatgcccctgtggaggagaaggaactgcctccc
cacgcttgcgcctactgtggcatccactcgccctccagcgtcgtcaagtgccttgcctgc
aacaagtggttctgcagcgccaaaggaagcggcttctcgtctcacattgtcaaccatctc
gttcgagctcgccacaaggaagtccagctgcaccccgagtcttcccttggcgataccgtc
ctcgaatgctacaactgcggtaccaagaatgttttcatcctcggttttatccctgccaag
tcagacaccgttgtggtcctgctttgtcgccagccgtgtggtgccagtacgtcgaccaag
gatatgagctgggatatatctaggtggcagcccttgatcgaggacagggcgttcctcagc
tggctcgttacccctcccacagatgccgagcagcttcgtgcccgccaccttacgccgcct
atgattgccaagctcgaggaaatgtggaaggaggctcccaacgcgactgttgccgatctc
gaaaagagtgctggagttgatgatgatcctcacccggtcttgcttaagtacgacgacccc
tatcattatcagaacattttcggccctctcgtcaagatggaatccgattacgacaagaag
ctgaaggaggcacagtccgaggatggccttcaagttcgctggcatcttggtctcaacagc
aagcatgtcgccagcttcatccttcccaagatcgagtccggtgatgtcaagctggccgtg
ggtgacgagatgcgtctgaagtacaagggagagctgcgcccgccttgggagggtgttgga
tatgtcatcaagattcccaacaaccagtccgatgaggttgaggtggaacttcggaaatct
gccaatgacaagtccgtcccgacagagtgcacacacaacttctcggctgactatgtgtgg
aaggcaacctcctacgaccgcatgcagctggccatgaagacatttgccgtcgacgagatg
agtgtttctggttacattttccacaagctgttgggccacgaggttcaagttgccccaacc
aagattacaatgcccaagaagttccatgttcctggtcttcccgagctcaatgccagccaa
atcgccgccattaaacaggtcttgtccaatcctctcagtcttatccagggtcctccggga
actggaaagaccgtcacttcggccaccatcatctatcatcttgccaagatgagcaacagc
caggttctcgtttgcgctccgtctaacgtcgccgttgaccagctctgcgagaggatccat
agaacaggcctgaaggtcgttcgcttgaccgccaagtcccgtgaggatgtcgagtcctcc
gtcagctttctggctctccatgagcaggttcgcatgaacactaccaacaaggagcttgat
ggcctcgtcaagctcaagaccgagaccggcgagctttcgtctcaggatgaaaagaggttc
aagcagctgacgcgccaggctgagcgtgagattctgcagaacgctgatgtagtctgctgc
acttgtgttggtgccggagatccacgactttctaagatgaagttccgcaatgtgctcatc
gacgaatctacacagtctgccgaacccgagtgcatgattccgctcgtccttggatgtaag
caagttgtcttggttggtgaccacaagcagcttggccctgtcatcatgaacaagaaggct
gccaaggctggcctcaaccagtcgctcttcgagaggttggtcaagctccagtttaccccc
attcgcctgaaggttcagtatcgtatgcatccttgcctctctgagttcccctccaacatg
ttctacgatggatcgttgcagaacggcgtcaccgccgccgagagactccgcaaggatgtc
gatttcccctggccggtccctgagactcccatgatgttctggtcaaacttgggcaacgag
gaaatctcggcctcaggcacgtcgtacctcaaccggactgaggccgccaacgtcgagaag
attgtcacacgcttcttcaaggccggtgtcaagcctgccgacatcggtgtcattacaccg
tacgagggccagcgtagctacatcgtcaacaccatgcagaacaccggcacgttcaagaag
gaatcctacagggaagttgaagtcgcttccgtcgatgccttccagggccgagagaaggaa
ttcattgtgctgtcctgcgttcgctccaacgagaaccaaggcattggtttcctttcggat
ccccgtcgtcttaacgtcgccctcactcgtgccaagtatggtctggtgattattggtaac
cccaaggttctgtgcaaacatgagctctggcaccatcttctcgttcacttcaaggacaag
aagtgtctcgtcgaaggccctctcacaaacctccagccttcccttcttcagtttggcaga
cctcgccaggcctaccggccgcaacgcagccacacccaacatgttgccagcggcgcgtct
aatggccggtacgttgctcccttgactgccggctccgtcagagattacgagactggttcc
atgatctcgtacatcccggatgacgtctcatccatccatagctccgctctgggaggtgcc
ggtttgagctctgcttaccccacaatgttttcaaactttcaccctgaggcgtggcctggt
ctgccgggtgctggtcccaatggacgcccgggcgctaagggccgtggtcgtgcgacagag
agtatcgcaggcgagagcgtcgccaacagcgagttcaccgatgctacttccagtgttatc
ggcagcaagggtatcggacagggcggcgcgagtctcggtgctggccttagcgaggccatc
ggatctgcccgccctacttcctacagccagagcgatcgccttaagcagtatgtcgagagc
aatggtcgcatgggagtcggcaacggatatcgccgttatgatgacgacgagaagagcgtc
agcactgcttttgccagccagatcgggacaggttttgattga
DBGET
integrated database retrieval system
