Sordaria macrospora: 10803803
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Entry
10803803 CDS
T01610
Symbol
SMAC4_05315
Name
(RefSeq) uncharacterized protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
smp
Sordaria macrospora
Pathway
smp03030
DNA replication
smp03410
Base excision repair
smp03420
Nucleotide excision repair
smp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
10803803 (SMAC4_05315)
03410 Base excision repair
10803803 (SMAC4_05315)
03420 Nucleotide excision repair
10803803 (SMAC4_05315)
03430 Mismatch repair
10803803 (SMAC4_05315)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smp03032
]
10803803 (SMAC4_05315)
03400 DNA repair and recombination proteins [BR:
smp03400
]
10803803 (SMAC4_05315)
Enzymes [BR:
smp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
10803803 (SMAC4_05315)
6.5.1.6 DNA ligase (ATP or NAD+)
10803803 (SMAC4_05315)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
10803803 (SMAC4_05315)
DNA replication proteins [BR:
smp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
10803803 (SMAC4_05315)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
10803803 (SMAC4_05315)
DNA repair and recombination proteins [BR:
smp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
10803803 (SMAC4_05315)
NER (nucleotide excision repair)
Other NER factors
10803803 (SMAC4_05315)
MMR (mismatch excision repair)
Other MMR factors
10803803 (SMAC4_05315)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
10803803
NCBI-ProteinID:
XP_024511556
LinkDB
All DBs
Position
4:complement(join(2467759..2468295,2468364..2470246,2470311..2470621,2470966..2470994))
Genome browser
AA seq
919 aa
AA seq
DB search
MPPKQQQTLGKFFGKKDAPSSDGKQQTKLSFGTKAITTSKKEETNKDESSEDAGHEEVEK
KVEEMKLKDKSPAKTGRGRGRPPTKGKEVAKEAAKEEEDEDVMEVVEEVKEETDNKKKRS
RSPTTKSPKSKKAKTEDDTEDVVAPVSKRLRRGRKVVEDDEDEIMEDVPASSAPVKEEKK
KAASPKPARKKKSPSPAPVEKVDDEEASSASASEIEAEEEEVDEDEKTEAVAKKARKVIQ
TTLTTKVKDPFPDWKAGEPVPYAALCTTFSLIEQTRKRLLIMEYCSLFLRQVLRLTPDDL
LPTVLLMINKLAPDYAGIELGIGESLIMKAIGETTGRSVAVIKNDQKEIGDLGLVAVKSR
SKQPTMFKPKPLTIRGVHKGLMDIATTMTGTGAQQKKVDGIKKLLSAADANSTGKVDIIK
EKGGPSEAKFIVRFLEGKLRLGLAEKSVIVSLAQAMIAHEFAQKGKVPSESDFSKAESIL
KTVYSELPSYNVIIPAMLQHGIMNLRDHCKLRPGVPLKPMLANPTKAITEVLDRFEGQTF
TCEYKYDGERAQIHYVAKDAPKSDGDLSQVASKETGKGVAAIFSRNSEDLSQKYPDVLAK
LPTWVKEGTKSFVLDCESVAWDTVEKKVLPFQQLMTRKKKDVKLEDVKVKVCVFAFDLLY
LNGQAVVEKSLRERRELLRSAFKPVEGEFSFATSMDGQELDEIQMFLDESVKASCEGLMV
KMLDGAESGYEPSKRSRNWLKIKKDYLAGIGDSLDLVVLGAYHGKGKRTSVFGAFLLACY
NPNSDTYETVCNIGTGFSDEVLQELHASLSPIIIDRPKPFYAHSSGGQHQPDVWFEPKYV
WEVKTADLTLSPRYKAGMKEGVDPAGEKGISLRFPRFIKVREDKKADEATTSRMVAEMYR
KQESVGKSKGPAVDDDFEY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaagcaacagcagacgttggggaagttcttcggcaagaaagacgccccctca
tcggacggcaagcagcagacgaagctgtcctttggcacgaaagcgattactacctcgaag
aaggaagagaccaacaaggatgagagcagtgaagatgctggacacgaagaggtagagaag
aaggtggaggagatgaagctcaaggataagagtcctgcaaagacggggagggggagaggt
aggcctccgaccaaggggaaggaggttgctaaggaggcagcaaaggaggaggaggatgag
gacgtgatggaggtcgtggaggaggtgaaggaggagacagataacaagaagaagaggtca
cgatcaccgacgaccaaaagccccaagtcgaagaaggccaagaccgaggatgacacagag
gacgttgttgcgcctgtcagcaagcggttgaggagaggtcgcaaggtggttgaggatgac
gaggacgagatcatggaggatgtccctgcttcttctgcgccggtaaaggaggagaagaag
aaggccgcttcgcccaagcctgcacgaaaaaagaagagcccatctcccgcaccggtagag
aaggttgatgatgaggaagcctcttcagcatcggcatccgaaatcgaagccgaagaggaa
gaggtagacgaggacgaaaagaccgaggcagtcgccaaaaaggctcgcaaggtcatccag
accacactcacaaccaaggttaaggaccccttcccggactggaaggccggcgagcctgtt
ccctacgccgccctctgcacgacgttttcacttatcgagcagacacgcaagaggttgctc
atcatggagtactgctctcttttcctgcgccaagtcctccgtctcacgcccgacgatctg
ctgcccaccgtactgctcatgatcaacaagcttgcccctgattatgcgggtattgagctg
ggcattggtgagtcgcttatcatgaaggctatcggcgagaccacgggccgcagtgttgct
gttatcaagaatgaccagaaggagattggtgaccttggtctggtggctgtcaagtcgagg
tcgaagcagccgactatgttcaagcctaagccgttgactattcgcggtgtgcataagggt
ctgatggatatcgctacgaccatgacgggcacgggcgcccagcagaagaaggtggacggt
atcaagaagcttttgtcggctgccgatgcgaattcaaccggaaaggtggacatcatcaaa
gagaagggcgggccgagcgaggccaagttcatcgtccgcttcctggagggtaagctgcgg
ttgggactggcagagaaatccgtcatcgtctcgttggcgcaagccatgatcgcacacgag
tttgcgcaaaagggtaaagtaccaagcgaatccgacttcagcaaggccgagtccatcctc
aagaccgtctacagcgaactgcccagttacaacgtcatcatccccgccatgttgcaacac
ggcatcatgaacctccgcgaccactgcaagctgcgtcccggtgtgccgctcaagcccatg
ttggctaacccgacaaaggccatcactgaagtgctcgaccgcttcgagggccagacgttc
acgtgcgagtacaagtacgacggcgagagagcgcagattcattatgttgccaaggacgcg
cccaagagcgatggtgacctcagccaggtcgctagcaaggagaccggtaagggcgtcgcg
gctattttctcgagaaactcggaggatttgtcgcaaaagtacccggatgtgctcgccaag
ttgccgacgtgggtcaaagaaggcaccaagagttttgtgctggactgcgagtccgtggcg
tgggacacggtcgagaagaaggtgttgccgttccaacagctgatgacacgcaagaagaag
gatgtcaagctggaggatgtcaaagtcaaggtgtgcgtgtttgcttttgacttgttgtat
ctgaacggtcaggcggttgtggaaaagtcgctgagggagaggagggagttgttgaggagt
gcgtttaagcctgtggagggcgagttctcgtttgcgaccagcatggatggccaggagctg
gatgagattcagatgttcctggatgagtccgtcaaggcgagttgcgaggggttgatggtc
aagatgttggatggcgcggagagtgggtatgagccgtcgaagaggagtcggaattggttg
aagatcaaaaaagactacctagccggcataggcgactcgctcgacctcgtcgttctcggc
gcctaccacggcaaaggcaagcgtacctctgtcttcggcgccttccttttagcctgctat
aaccccaactccgacacctacgaaaccgtctgcaacatcggcaccggcttctcggacgaa
gtcctccaagagcttcacgcttccctatcccccatcatcatcgaccggcccaagcccttt
tacgcgcactcctcgggcgggcagcaccagccggacgtctggttcgagccgaagtacgtg
tgggaagtcaagacggccgatctgacgcttagtccgaggtataaggcgggcatgaaggag
ggcgtggatccggctggcgagaagggtatttctctcaggtttccgaggtttatcaaggtc
agagaggataagaaggcggatgaggcgacgacgagcaggatggtggctgagatgtatagg
aagcaggagagcgtggggaagagtaaggggccggctgttgatgatgattttgagtattag
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