Sordaria macrospora: 10804037
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Entry
10804037 CDS
T01610
Symbol
SMAC4_04070
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smp
Sordaria macrospora
Pathway
smp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
10804037 (SMAC4_04070)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smp03019
]
10804037 (SMAC4_04070)
03041 Spliceosome [BR:
smp03041
]
10804037 (SMAC4_04070)
03009 Ribosome biogenesis [BR:
smp03009
]
10804037 (SMAC4_04070)
03016 Transfer RNA biogenesis [BR:
smp03016
]
10804037 (SMAC4_04070)
Enzymes [BR:
smp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
10804037 (SMAC4_04070)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
10804037 (SMAC4_04070)
Spliceosome [BR:
smp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
10804037 (SMAC4_04070)
Complex C
U4/U6.U5 tri-SnRNP related factors
10804037 (SMAC4_04070)
Ribosome biogenesis [BR:
smp03009
]
Eukaryotic type
Pre-60S particles
Helicases
10804037 (SMAC4_04070)
Transfer RNA biogenesis [BR:
smp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
10804037 (SMAC4_04070)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Helicase_dom4_arc
Epiplasmin
Motif
Other DBs
NCBI-GeneID:
10804037
NCBI-ProteinID:
XP_065947119
LinkDB
All DBs
Position
5:complement(join(1275103..1275283,1275351..1278463))
Genome browser
AA seq
1097 aa
AA seq
DB search
MDDLFEVFEEQPRAQKKRKASPDVEMTDGAATAAAAANAAAVTHMQAQVVPVPQEDNDNN
NNTVDQPATSNGDAPATADDVQSPQSPHGQGDSKRRKRTDEAEPIMTDAFQTAESREVTG
AQGFAPTEGESIVISHNIQHQVALPPDLDYEYIPLSEHKPPAEPARTYSFKLDPFQALSV
ASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSPIKALSNQKYRDFQAEFGD
VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKIRGVVWEE
TIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGKGI
LLIVDEKGNFKENNFNQAMAMIEEKKGTDSNDWSAKQKGKGKNKKTNKGGEAANEKADIA
KIIKMILKKNFQPVIVFNFSKRECEQMALASSTMKFNAPDEENMVNKVFENALAQLSEDD
KNLPQIANILPLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPART
VVFTQVTKWDGQQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGN
QDKLNSAFHLGYNMVLNLLRIEAISPEYMLERCFFQFQNAASVPQLERELISLQQERDSI
IIPDESIVKDYYNVRQQLEDYNKDMVHVIQHPQNCVGFFQEGRLIHIKSPSGVDFGWGVL
IKHTPRQQPKNGQPPYPDQESYLLDVLLKVSGDFNPKARGEKPMPEGIMPAGKDSKNARW
EVVPCLLNCLKALGQLRVFLPKRLESADEKDGVGKATDEISRRFPDGIPMLDPMENMGIN
DDSFKKLLRKIEVLESRLVANPLHNSPLLIELWNQYSLKTQLAEQIKDKKKAIAQAHSVA
QLDELKSRKRVLRRLGFINDAEVVEMKARVACEISSTEGHELLLAELLFNRFFNELSPEI
CACILSCFIFDEKIETQALKEELAKPYREIQAQARIIAKVSAESKLDVNEDEYVQSLKWQ
LMETVLAWAQGRPFSEICKMTNVYEGSLIRLFRRLEELLRQMAEAARVMGSEELKDKFEL
SLSKIRRDIVSFNSLYL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctctttgaggttttcgaggagcagcctcgcgctcagaagaagcgcaaggcc
tctcccgatgtcgaaatgactgatggagctgccaccgctgctgccgctgcgaatgccgcc
gccgtcacccacatgcaagcgcaagtcgtccccgtgccgcaagaagacaacgacaataac
aacaacacggtcgaccagcccgcgacttccaacggcgatgcccctgccactgccgacgat
gttcagtcgccccagagcccccatggccagggcgacagcaagcgcagaaagaggaccgac
gaggccgagcccatcatgaccgatgccttccagacggcagagtcccgagaggtcaccggc
gcccagggtttcgcgcccaccgagggcgagtccatcgtcatctcccacaacattcagcat
caagtcgcccttccccccgaccttgactacgagtatatccccttgtccgagcacaagccc
cccgccgaacccgcccgaacatactccttcaagctcgatcccttccaggccctctccgtc
gcctctattgagcgcgaagagagtgtcctggtttccgcccatacctctgctggtaagacg
gtcgttgccgaatacgccattgcccagtgcctcaagaagaaccagagggtcatctacacg
agtcccatcaaggctctttccaaccaaaagtacagagacttccaggccgagtttggtgac
gttggcctcatgactggtgatgttaccattaatcccacagccagttgtctcgtcatgacg
accgaaattctgcggtccatgttgtatcgcggttccgaaatcatgcgcgaagtcgcctgg
gtcgtcttcgatgaaatccattacatgcgcgacaagattagaggtgttgtctgggaagag
accatcatcctgcttcccgacaaggtcagatacgtcttcctctccgccaccattcccaac
gccttccagttcgccgaatggatcgccaagatccatcgtcaagcctgccacgtcgtctac
accgatttccgtcctacgcccttgcaaaactacttcttccccgccggtggcaagggtatc
ctcctcattgtcgacgagaagggtaatttcaaggagaataacttcaaccaagcaatggcc
atgatcgaagagaagaagggtaccgattccaacgactggagtgccaagcaaaagggcaag
ggcaagaacaagaagacgaacaagggcggagaggctgccaacgagaaggcggatatcgca
aagatcatcaagatgattctcaaaaagaatttccagcctgtcatcgtcttcaacttcagc
aagagagagtgcgagcagatggccttggccagttccaccatgaagttcaacgccccggat
gaggagaacatggtcaacaaggtgttcgagaatgctcttgctcagctgtccgaggacgac
aagaaccttccccagatcgccaacatccttccccttttgcgcaagggtatcggtgtgcat
cactccggcttgttgcccatcctcaaggagaccattgagattctgttccaggagggtctt
atcaaggtccttttcgccaccgaaaccttctccatcggtctaaacatgcctgccagaacc
gtcgtcttcacccaggtcaccaagtgggacggtcagcaacgccgccctcttacttcctct
gagtacattcagatggctggcagagctggtcgtcgtggtctcgatgaccgtggtatcgtc
atcatgatggtcgatgacaagctcgagcccgagacggccagagctatcgttgtcggcaac
caggataagctcaactccgccttccatctcggttataacatggtcctcaacctgctccgt
attgaggctatttcgcccgagtacatgctggagaggtgtttcttccagttccagaacgcc
gccagcgtaccgcagctcgagcgtgagctcatcagcctgcaacaggagagagactccatc
atcattcctgacgagagcattgtcaaggattattacaatgtccgtcaacaactggaagac
tacaacaaggatatggtccatgtcattcagcatccccaaaactgcgttggcttcttccag
gagggccgtctcatccacattaagagcccaagtggagtggactttggctggggtgttctg
attaagcataccccccgccagcaaccgaagaacggtcagcctccttatccggaccaagag
tcatacctcttggacgttttgttgaaggtgtctggcgactttaaccccaaggcacgtgga
gagaagccgatgcctgagggtatcatgcctgcaggaaaggatagcaagaatgccaggtgg
gaggttgtcccctgccttctgaactgtctcaaagctctcggccagctgcgtgttttcttg
cccaagaggcttgaaagcgccgacgagaaggacggagtgggtaaggccactgacgagatc
agccgtcgcttccctgacggcatccctatgctggatcctatggagaacatgggtatcaat
gacgacagctttaagaagctgctccgcaagattgaggtcctcgagtcgcgtttggtggcc
aaccctctccacaactctcctctccttattgaactgtggaaccagtacagcctcaagacg
caacttgccgagcagatcaaggacaagaagaaggccattgcccaggcccacagcgttgcg
cagcttgacgagctcaagtctcgcaagcgtgtccttcgccgtctgggcttcatcaacgac
gctgaggtcgtcgagatgaaggcccgtgttgcgtgcgagatctcctcgaccgagggtcac
gagcttctccttgccgagctgctcttcaaccgcttcttcaacgagttgagccccgagatt
tgcgcttgcattctcagttgcttcatcttcgacgagaagatcgagacacaggcgctcaag
gaggagctggccaagccctatcgtgagatccaggcccaggccaggatcatcgctaaggtc
agcgccgaaagcaagctggatgtcaacgaggacgagtacgttcagagtctcaagtggcag
ctcatggagactgtcttggcttgggctcagggaaggccgttctccgagatttgcaaaatg
actaacgtctacgaaggctcgctcatccgtctcttccgccgtctcgaagagcttcttcgc
caaatggccgaggctgctcgcgttatgggcagcgaggagctcaaggacaagttcgagctc
agcttgtccaagatcaggcgtgacattgtttctttcaacagtttgtatctgtaa
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integrated database retrieval system
