Sordaria macrospora: 10804831
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Entry
10804831 CDS
T01610
Symbol
SMAC4_08679
Name
(RefSeq) uncharacterized protein
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
smp
Sordaria macrospora
Pathway
smp03020
RNA polymerase
smp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
10804831 (SMAC4_08679)
09124 Replication and repair
03420 Nucleotide excision repair
10804831 (SMAC4_08679)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smp03021
]
10804831 (SMAC4_08679)
03400 DNA repair and recombination proteins [BR:
smp03400
]
10804831 (SMAC4_08679)
Enzymes [BR:
smp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
10804831 (SMAC4_08679)
Transcription machinery [BR:
smp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
10804831 (SMAC4_08679)
DNA repair and recombination proteins [BR:
smp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
10804831 (SMAC4_08679)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-GeneID:
10804831
NCBI-ProteinID:
XP_003347404
UniProt:
F7WAM6
LinkDB
All DBs
Position
7:join(3525289..3526981,3527021..3528989,3529048..3529210)
Genome browser
AA seq
1274 aa
AA seq
DB search
MAAYAKDGSQSYGGYGDTYDNDDNYENLSTFDDEDDGSDPNAITPEDSWEVISSYFDLKG
LVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDDGRDIILRRYDVHFGEIIISRPT
LTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTDDEHDHMARTG
EHPTVLRWIEEESAPPEPPKEDKVNAENLKGYLFLGKIPIMVKSKICHLYMEDDESLFTL
NECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLIS
SLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDS
QMLEALRPCIEEAFCIQDREVALDYIGKRGNGGAGVNRNARIKAAKDMLQKELLPHISQA
EGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQD
LMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYT
FASTLSHLRRTNTPIGRDGKLAKPPETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMVA
RNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIR
DREFKIFSDAGRVMRPLFTVEQEDNGESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFG
WQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFN
PTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTM
ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR
SLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIII
GKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTK
IPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLS
KVGSLKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYY
QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLF
EVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNI
ASRMFTSRSGITVR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctacgcaaaggacggtagccagagctatggcggctatggggacacatacgac
aatgatgacaactacgagaacctctccactttcgacgatgaggatgacggttccgaccct
aacgccatcacgcccgaggattcgtgggaagttatctcctcctacttcgacctcaagggc
ctcgtgtcccagcagatcgattccttcaacgaattcacaacagacaccgtgcaatctcta
atagacgagtatgccgatctcaccttggaccacccaagcccaggcgacgacgacggcaga
gacatcatcctgcgcagatacgacgttcacttcggagagatcatcatttccaggccgacc
ctcaccgaagccacgggcgagaccatcagtcttctcccgtacgaatgccgtgaccgcaac
ctgacatactcggcccccatctactgcaaggtcaccaagcgcgcccgtatcgccgttagc
gaaaagaagcctctaaaccagcttaccgatgacgagcacgaccacatggcccgcaccggc
gagcacccgactgttctgcgctggattgaggaggagagtgcgccgccagagccacccaag
gaagacaaggttaacgctgagaatctcaagggatacctcttccttggcaagattcctatt
atggtcaagtccaagatttgccacctttacatggaggacgacgagtcgttgttcaccctc
aacgagtgtccttacgaccagggtggttacttcatcatcaacggcagtgagaaggtcctg
attgctcaagagcgcagtgccgccaacattgtccaggtcttcaagaagccccctggcggc
agtgtctcgtaccaggctgagatccgcagtgccctcgaaaagggttctcgtctcatctcc
tctctccagatgaggctgcacaccaaggccgaccagaacaagggtcgcctggccaacact
gtcagcgtcaccctgccgtacgttaaggaagaggtctctctcgccattgtgtttcgtgct
ttgggcgttgtttccgatgaggatattctcaaccacatttgctatgaccggcgcgacagc
caaatgctggaagcccttcgtccctgcattgaggaggccttctgtatccaggaccgcgag
gtcgctttggactacatcggcaagcgtggtaacggcggcgcgggagtaaaccgcaatgcc
cgcatcaaggctgccaaggatatgctccagaaggaactgctaccgcatatttcccaagcg
gaaggttgcgagaccaggaaagccttcttccttggatacatggtccacaagttgctccag
tgtgtccttggccgcagagataccgatgatcgtgatcacttcggtaagaagcgccttgac
ttggctggtcccctgctggccaagcttttccgtggtatcgtgagacgcctgactcaggat
ctcatgggctatatgaagcgctgcgttgataccaacaaacacttctccctggccctcggt
atcaaggcctccacccttaccaacggtctcaagtactcgcttgccactggtaactggggt
gaccagaagaaggccatgagctcgactgctggtgtgtcccaggtcttgaacagatacacg
ttcgcctcgaccttgtcgcatttgcgtcgtacaaacacacccattggtcgtgacggcaag
cttgccaagcctccagaaacgccagaaggtcaggcttgcggtctggtcaagaacttgtct
ctcatgtgcttcgtctccgtgggtacgctggccgatcccatcatcgagttcatggttgcc
agaaacatggaagttttggaggagtacgagcctttgcggtatcccaatgccacaaaggtc
tttgtcaacggtacttgggttggtgtccaccaagatcccaagcacttggtcactcttgtc
cagaacctccgacgcaagaacatcatttccttcgaggtttcgctggttcgcgacatccgt
gacagagagttcaagattttctccgatgccggtagagtcatgaggccgctgttcactgtc
gagcaagaagacaacggcgagtctggtgtcgaaaagggtcagctcatccttaccaaggag
catatcaggcgacttgagcaggataaggagcttggcaaataccatgaagattacttcggc
tggcaaggcctgcttgagtcaggtgccatcgaataccttgacgccgaggaggaagagacg
gccatgatctgcatgacaccagaagatctggacacctaccgtcaacacaagttcaagggt
cgcgagtttgaggacgacgctgccaaccgtggcaacagccgtatcaagacgaagttcaac
ccaacaacacacatgtacacgcactgcgagattcaccccagtatgcttctcggtatttgc
gccagtatcattcccttccccgatcacaaccagtcgcccagaaacacttaccagtctgcc
atgggtaagcaggccatgggcttcttcctcaccaattactcccgccgtatggataccatg
gccaacattctttactaccctcaaaaaccgttggcgaccactcgctccatggaatacctc
aagttccgcgagctccctgccggtcagaacgccatcgtcgccatcgcttgttactccggt
tacaaccaggaagattccgtcattatgaaccagagcagtatcgatcgtggtatcttccgc
tctcttttcttccgttcctacacggattgcgagaagcgtgtcggtatcaacattgtggag
cagtttgagaagccagacaggagcaacactctgcgacccaagcacggcacatacgacaag
ctcgaaaatgatggtatcattgctcctggcatccgtgtcaccggtgacgatatcatcatc
ggcaagacatctcccatcaaccctgataaccaagagcttggccagcgcacggctcagcat
gtcaagcgtgacgcgtccacgccactgcgcagcacggagagtggtatcgtcgattccgtc
gccttcacaaccaaccaggacggtctgcgctacgtcaaggtcagggtccgtaccactaag
atcccgcaaattggtgacaaatttgcctctcgtcacggtcagaagggtaccatcggtgtc
acttaccgtcaagaggatatgccattcactgctgagggtattacgcctgacattatcatc
aaccctcacgccattccctctcgtatgacaatcgcccatttgatcgagtgtcttctttcc
aaggtcggttccctcaagggcatggagggtgatgccacccccttcacggatgtcacagtc
gactccgtctccaaccttctccgcgagcacggctaccagtctcgtggcttcgagattatg
tatcacggccacacgggtaggaagcttcgcgcccaggtgttcttcggtcctacctactac
cagcgtttgaggcatatggtggacgacaagatccacgctcgtgcccgtggtccggtacag
atcatgactcgtcagcccgtcgaaggtcgtgccagagatggcggtctccgtttcggcgaa
atggaacgtgattgtatgattgctcacggtgccgcttcattcttgaaggagaggttgttt
gaggtctcggatgctttcagagtgcatatctgcgagatctgcggtctcatgactcctatt
gcgaacctgaccaagcaatcgttcgaatgccgtccttgcaagaacaagaccaagatcgcc
caggtccacatgccctacgcggccaagcttctcttccaggagctcatgtcgatgaacatt
gcctcgcgcatgttcaccagcaggtccggcatcacggttcgttaa
DBGET
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