Sordaria macrospora: 10805876
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Entry
10805876 CDS
T01610
Symbol
SMAC4_02917
Name
(RefSeq) uncharacterized protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smp
Sordaria macrospora
Pathway
smp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
10805876 (SMAC4_02917)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smp03041
]
10805876 (SMAC4_02917)
Spliceosome [BR:
smp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
10805876 (SMAC4_02917)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR41
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WDR54
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_RIG_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
10805876
NCBI-ProteinID:
XP_024511397
LinkDB
All DBs
Position
1:complement(join(4544147..4545648,4545708..4545741,4545828..4545872))
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AA seq
526 aa
AA seq
DB search
MHPSRRAYVEEAEPEQDRGGIDLDSVPLDRDYDIPGAGAGIAPEKASVLLSQFERKRLAA
SIAVPTDDGRVRAKLREMGEPVTLFGEGPADRRDRLRELMTLQAEKGGQENADVEMQDAD
NDDDEAGDQEEEFYTTGTPELLQARIDIAQYSIPRAKKRIEFQKKESTIPLRTHVKHRKE
IKEKLQGFELQGSQTAGERHISMTRISPDGNMVATGNWGGQVKLIEIPTLEPKKTLRGHT
NKVSGLCWMPGATLPERNVSPDTVNLASGGAEGLVHLWSLNQDTPLRTLTGHSQRVCRVE
FHPSGRYLASASEDTSWRMWDVETGTELLLQEGHSRGVYAVSYNTDGSLLASAGLDSIGR
IWDLRTGRTAMILDGHQDGHIKPIYGLDWGSDGYRVLTASADGWIKCWDVRKVERIGGIG
AHTSAVADVRWFKGLDDPLEGVAPGEDEKGMQIPKKSGTFMVSAGFDHKVNIFSADDWAL
VQSLSGHTGPVSSVDVSGDGKWIVSGGHDRTVKLWGRNDSKGLYES
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgcatccgtcgcgtagagcctacgtagaggaggccgagcctgagcaggatcgcggaggc
attgatctcgactctgttcctcttgatcgcgactatgacattccaggtgctggggctggt
attgccccagagaaggcatctgtactcctttcacagttcgagcgaaaacgattagcagct
tcgattgccgttcctaccgacgatggccgggtgcgagccaaattgcgagagatgggcgag
cccgtcaccctcttcggcgagggtccggcagacagacgcgacagattacgagaacttatg
acactacaagccgagaagggaggccaagaaaacgccgatgtggaaatgcaagacgccgac
aatgatgatgacgaagccggcgaccaagaggaagaattctacaccactggaaccccggag
ctgcttcaggcccgcatcgatatcgcccaatactcaatccccagagccaagaagcgcatc
gaattccagaagaaggagtccaccattccactgcgaacgcatgtcaaacaccgaaaagag
atcaaggaaaagcttcagggatttgagctacaaggcagtcaaacggcaggagagcggcac
atcagcatgacgaggatttcccccgatggaaacatggtcgcaactggcaactggggtgga
caggtcaaacttatcgagatcccgacccttgaaccaaagaagactttgaggggtcatacc
aacaaagtgagcggtctatgctggatgcctggagctacactgcctgagcgcaatgtttct
cccgatacggtcaacctcgcttctggaggtgcggaaggcctggttcatctctggtctctg
aaccaggatactccgctcagaactcttacgggacattctcaacgagtgtgtcgtgtagag
ttccacccttcgggcaggtatctggcttctgcctcggaagacacctcgtggaggatgtgg
gatgtggaaaccggcaccgagcttcttctccaggaaggccactctcgcggtgtctacgcc
gtcagctacaacactgacggatcgctacttgcgagcgcggggttggacagcattggaaga
atctgggatttgcggacaggacggactgccatgattcttgatgggcaccaggacggccat
atcaagcctatttatggcttggactggggctcggacggttacagggtgctcacggcgtct
gctgatggctggatcaagtgctgggatgttaggaaagtggaaaggataggaggaattggt
gcacacacaagtgcggtggccgacgtgcggtggtttaaggggttggatgatccgttagaa
ggagtagctcctggcgaggatgagaagggaatgcaaattcccaagaaatccggcaccttt
atggtttcggcaggctttgaccacaaggtaaacatattttccgccgacgactgggccttg
gtccagtccctcagcggccacacagggcctgtttcgagtgtcgacgttagcggggatgga
aagtggattgtaagcggtgggcatgatcggacggtcaaactttggggacgaaacgactcc
aagggcttgtatgaatcctga
DBGET
integrated database retrieval system
