Sordaria macrospora: 10807232
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Entry
10807232 CDS
T01610
Symbol
SMAC4_07069
Name
(RefSeq) uncharacterized protein
KO
K12879
THO complex subunit 2
Organism
smp
Sordaria macrospora
Pathway
smp03013
Nucleocytoplasmic transport
smp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
10807232 (SMAC4_07069)
09122 Translation
03013 Nucleocytoplasmic transport
10807232 (SMAC4_07069)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smp03019
]
10807232 (SMAC4_07069)
03041 Spliceosome [BR:
smp03041
]
10807232 (SMAC4_07069)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
10807232 (SMAC4_07069)
Spliceosome [BR:
smp03041
]
Complex C
Other components
EJC/TREX
10807232 (SMAC4_07069)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
10807232 (SMAC4_07069)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
10807232
NCBI-ProteinID:
XP_065946463
LinkDB
All DBs
Position
3:complement(join(2092669..2095731,2095783..2100420))
Genome browser
AA seq
2566 aa
AA seq
DB search
MPPKRKRSDHRGPPDSGPSRPAPHRPDNASLGQHDRGYDGGRGGGRNGRNTRRPDRRDSN
QPYISNNNNNNPNPPIPSSASRPPSSSANNLLPINTAPQTPAPIQTAAAPTPALPPQPTY
SAPSSPIQPGYDYSIITDDRVSRWSKGARQEVIDHGIQSRDDEDLTEVAAIFQELIHSAV
DGRLPGSDAGKVIKDILGPEPSESDRANLVFDAHTLFLDTVATFMDVENAPFRPQLRDLM
YATEVSTTLMRQVLDAAVLQPLGLVRDTFVRVGIRQSTNLLYRQANYNLLREETEGYSKL
VTELFTTSSAEPPSSEVVQAAFNKVMGLIGTFDLHPGRVLDVTLDVFASVLIKQFRFFIK
FLRVSSWWPRSQIKLPPGTFVGGLPIWALPDHFNWVASEEEEKELATQRLKRDIAFWDRA
RKIKLDAFFELGGRQITNVDDENLPDASTESGQESSIEKEWIKITKTLPPTGNRDAAQML
GFKLRFYTTEARDPEDMLPANLLYLLALLIKVGFITLTDLWEHIWPPDDQMEAVKEARFK
ELEEKERANRPGGASNALMMAGALPDDMAPPPMNSRRGMDHGKADADTKATAEAAEEKPK
LPEPDDQKVILLKCLLTIGAIPESLFIIGRHDWILQAHPDLVPLVHRILHHSVETVYQQS
RPQPKSSSSANCPGKKLPDMDQSGVPKGSIRLAAVTPKRALRWPFPDAETSEGGGYRFYW
DEWADNVPVCQTVDDIFTLCDTFVNVIGVQIGQDAGLIAKLTSIGAKNMADDPSPANRAR
WLALLKRLLVPSLSLLETNSSVVDGVWTLLKQFPIHVRYNVYAEWYEGQTSRLEPMKKAF
ARTRLETLSTMKRLSLTNIPQMAKTLAKTAYPSPGIVCKVALQQIESYSNLIEAFVECAK
YFTDLGYDVLVWSVLSSLGGQQRSRTQESSVLLTSKWLQALSRFSGKVFLRYSRMDPTPI
LRYVDNQLSKGNSTDLVILKELISSMGGVVSDLDFTDAQLHAMTGGELLRRETLTNLGDK
RYVSTKSADRLIQALMTNGLAGRLLANIAQYRQSAISAVVQGDAHIKYLATMADDTHQVL
LQYLDLLRSSLDGETFNNLVPSVIRLMRDYGLGAGLAFLIGRASIRTAMNRVRGQSESQA
PAASAAPDTDGDVAMTTANDDDAANTPATEAQTTIPANERKVDPVLEPFQPVIDEIPTIL
SEDTLRYITPTCYVLFWALQLGDLSFPQDNYSDEVSRLKKLAREVMNDRSDMTRMGMNKK
TQKQAEINARVSSLLKENSEELQRYSKFRFQLSRQLTTWFPADIKKVDATADTMLEECIL
PRLQLSGLDAEYSFKFLKFLHEFSAPNFKLMSLYDRLFRHNRLRSMLFTCTVREAEHIGR
FLKCILSELSKWHGDKNAYEKEALGSKEVQGKKTRNYVGFATAFDADGKPTEFVEHDGFR
DLLFKWHKELNSALRACLNDMEWMHIRNAITVLKAVIDFFPAINFMGDKFLEQLKTITER
EAASKNAPETEEGHRVDLSVTAQTAFSELQKRKSKWVLVQAFRPGTATDSKEEGKPSLRA
AAVTLKPSSHGRKQTAGEVEDGEVKDNRSGRSGAASGSQKDSASTRNLPTREPLKDANPP
QRSMGGNGPPPRPPAPNAGPLPTKLPGNRSDANRTSTLTSGGRGLPSNPDLPRRPDVPIP
EVFSASHFNRAQHNMNNRREPASSRDGRDTREPRETREPREAHPREPREPVHGRDSRDYR
APETSRPERPRDFPSTERRPVEPPTRDSSRPSDREWPARAEPPPRWTEPTAASGRDGRQP
RDRTPHGTNRHDGRLSRENANAASSVAAPSHNDAPEPLINPERARLLAEAEQKQSHPTPP
RAAEPQHPHINPARAALITDVREPQGRSSSRDQTRERPPRTESPRASERSATSQADSARD
ERPGRHRQHSDYHSTRGDSHAHGDSGSSHGRLDRPAEIERPGGSRDGSFNQPPRGTDHDH
GRPVQQDPNYGRLNPIQSVVDSVPAPVPVATSGSGGPPPSGPRGRGRNNARMGPANGVPI
RPDGRFPGMEANRTSSPDRQPPTGPSSSRQSRRGQYDNAGGNVNATPVSLPAQSPGVHPD
RMSHINQQPQQGGAQSSQQQQSQAGPPPPPPPPPSAPGVHPDRLNHINPDRLTQISGPPS
HRPTGPSPHNRPPINTPDRPSMPAPNTSGRQQPSGQHGSNFATPTGPSASNNDRMRSGGG
SRQLRGIQNMLDKASMDARGPGSRMRGSSRLNTMVDSDAQVLAGASPGNTPVNDRPDPLR
DIRESGSRRDMSTDRGDRERDRGRDTRDRESRDREPRGGLAPIQVVGDSREDSSVVPHGG
HSRSDVNGEGYVSSSRGGASGDHERGSSRHHGSRSERSDRPSRRSSRERNTGGGGGDAKE
SSSRGDYSRESRSRGGGGGGGGPSTVNAPGGPSADLVTGGSSRGDRRSGRDSNAGSGSGH
RGGGGGNMPPPPPSREPSHRGHGSHRGGGDGSGHNQGGAPPMGGGRNDGHGGRPPRESRS
SRPSGPGGGQDDMRGGGDDRSRKRRGDGVIDSSQGLGGHQDKRPRR
NT seq
7701 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaagcgcaaaagatccgatcatcggggcccgcccgactctggcccctccaga
ccggctccccatcgacccgataatgcgtcactgggacagcatgacagaggctatgatgga
ggacgcggcggtggccgtaatgggagaaacaccaggagacccgatcgtcgcgactcgaat
cagccttacatcagcaacaacaacaacaacaaccccaatccacccataccgtcgtctgct
tcccgccctccgagttcttcagcaaacaatctcctcccgataaacactgcaccacaaaca
ccagccccgattcagaccgcggccgcgccgacaccagctttgccacctcagcctacatac
tcggcgccttcttcacccattcaacccggctacgactacagcatcatcaccgatgaccgc
gtctccaggtggtccaagggcgcgcgtcaagaggttatcgatcatggtattcagtcacgc
gacgacgaagacctcaccgaggttgccgccatattccaggagctgattcactctgctgtc
gacggtcgtcttcctggttccgatgctggcaaggttatcaaggacatattgggccccgag
ccttcggagtctgatcgtgccaatctggtttttgacgcccataccctgtttctcgatact
gtagcgacctttatggacgtggaaaatgcgcctttccggccccagctccgcgatctcatg
tacgccacagaggtgtcgactaccctcatgcggcaagtccttgacgctgcagttcttcag
ccgctgggcctcgtccgcgatacgttcgtgcgtgtaggaatccggcagtcgacgaacttg
ctctatcggcaggccaactacaatctcctgcgagaagagacagagggctactctaaactg
gttaccgaactttttaccaccagcagtgcggaaccaccatcctccgaggtcgtacaggct
gcgttcaacaaggttatgggccttattggaacgttcgacttgcacccaggccgcgttctc
gacgtcacgctggacgtgtttgcctcggtactcattaaacagttcaggttctttattaaa
ttcctgcgcgtgagttcctggtggcctcgtagccagatcaaactcccgcctgggacgttt
gttggaggtttgcctatatgggccctccccgaccacttcaactgggttgcgagcgaagag
gaggagaaggaacttgcaacccaacgcctaaaacgcgacattgcattttgggatagagca
cggaagatcaaacttgatgcattcttcgagctcggcggcagacagattaccaatgtagac
gatgagaatcttccggatgccagcacagagagcggacaggagagcagtatcgaaaaagaa
tggatcaaaatcaccaaaaccctaccaccgaccggtaaccgcgatgcggcccagatgctg
ggcttcaagttgcgtttctatacgacagaagctagggatcccgaagatatgctcccggca
aaccttctctatctcctagccctgcttatcaaggttgggttcatcacgctaacagatctc
tgggagcatatctggccgccggatgaccaaatggaggctgtcaaggaagccaggtttaag
gagctggaagagaaggagagggcaaaccgaccgggaggtgcctctaatgcattgatgatg
gctggagcccttccagatgacatggcgcctcctccgatgaacagtcgccgcggcatggac
cacgggaaagctgatgctgataccaaagccacagccgaggctgccgaagaaaagcccaag
cttcctgagcctgatgaccaaaaggttatcctccttaagtgtctcctcacgattggtgct
atcccggaatctctgtttatcattggacgacatgattggattcttcaggcgcatcccgac
cttgttcctcttgtacaccgcatccttcaccattctgtcgaaaccgtgtaccaacaaagc
cgcccacaaccgaaatcttcgtcgtctgccaattgtcctggcaagaagcttccggatatg
gaccaatctggcgttcctaaaggcagtattaggctcgccgctgtcactcctaaacgcgcc
ctgagatggccgttcccagatgctgagaccagtgaaggaggtgggtatcgcttctattgg
gacgagtgggcggacaatgttcccgtctgccaaactgtcgacgacatcttcacgctctgc
gatacctttgtgaacgttattggcgtgcaaattggtcaggatgctggcctgattgcgaag
ctcacaagcatcggtgccaagaacatggctgacgatccgtcgccggccaaccgtgcccgt
tggttggcattactcaaacgcctcctcgtgccttccttgagtctgctggaaaccaactcc
tcagttgtcgatggtgtatggacccttctcaagcagttccctattcatgttcgatacaac
gtctacgccgaatggtacgagggtcagacttcccgacttgaacccatgaagaaggcgttc
gcacgaacccgcctagagacgctcagtaccatgaagcgtttgtctttgacgaacatccca
cagatggccaagacccttgccaaaaccgcttatccatctcccggtatcgtttgcaaagtc
gcgctgcagcaaatcgagtcttacagcaacttaatcgaggccttcgtggagtgcgccaaa
tatttcacagatcttggttacgatgttctcgtctggtctgtcctcagctctcttggtggg
cagcagagaagtcggacacaagaaagctcggtgctgcttaccagcaagtggctccaggct
ttgtccagattctccggcaaggtcttcctccgctattctaggatggaccccacacctatc
cttcgttatgtggataaccagctttccaagggcaactccactgacctcgtcatcctcaag
gagttgatttcttccatgggaggtgtggtttcggatctggatttcaccgatgcacagctt
catgccatgaccggtggtgagctcctaagacgggaaactcttactaacctaggcgataag
cgttatgtatcaaccaagagtgccgaccgactgattcaggcgctcatgaccaacgggctt
gctggccgcctcctcgccaacatcgctcagtaccgccaaagcgccatctctgcggtcgtt
cagggcgatgctcacatcaagtacctagccaccatggcagacgatacccatcaggtgctc
ttgcagtatctggatcttctccgcagtagtcttgatggagagaccttcaacaaccttgtg
cccagtgtcattcggctcatgcgtgactacggtcttggggcaggtcttgccttcttgatc
ggacgggccagtattcgcacggctatgaaccgagtgcgaggtcagtcagagagtcaggcg
ccggctgcctcagctgctcctgatacggacggagatgtggccatgactacagcaaatgac
gatgatgctgccaacacacctgccaccgaagcccaaaccacgattccggcaaatgagcgg
aaagtggaccccgttttggagcctttccaacctgttattgacgagattcccactatcttg
tcggaggacacccttcgatacatcacgcctacctgctacgtcctcttctgggccttgcag
ctgggtgacctttcattcccccaggataactacagcgacgaagttagtagactcaagaag
cttgctagggaggtaatgaacgacaggtcggacatgacaaggatgggaatgaacaagaag
acccaaaaacaagcggaaatcaacgctcgggtatcatccctcctcaaggagaacagcgaa
gagctccaacgatactcgaaattccgcttccagttgagcagacagctcactacttggttc
ccggctgatatcaagaaagtcgatgccacagcagataccatgcttgaggaatgcattctt
ccccggttgcagctttctggcttggatgccgagtacagcttcaagttcctcaagttcctt
cacgagttctccgcaccaaacttcaagctcatgtccctctacgaccgactcttccgacac
aacaggctccgcagtatgctcttcacctgcactgtacgtgaagcggagcacattggtcgt
tttttgaagtgcattctcagcgagctctcaaagtggcacggtgacaagaatgcttacgag
aaggaagcattaggctcgaaggaggtgcaaggcaagaagacaagaaactacgttggtttc
gctactgcctttgacgcggacgggaagcccacggaattcgttgaacacgatgggttccgt
gaccttctcttcaagtggcacaaggagctcaattcggcattgagggcatgcctcaatgac
atggagtggatgcatatcaggaatgcgatcacagtattgaaggctgtcatcgacttcttc
ccggcgatcaactttatgggcgacaagttcttggagcaacttaagaccatcaccgagcga
gaggctgcctccaagaacgctcccgagaccgaggaaggccatcgtgtcgatctctcggtt
acagcacagacggcgttctctgaactacaaaagaggaagtccaaatgggtcctggttcag
gcattccgccctggtacagcaaccgattcgaaggaggagggaaagccctctcttcgcgct
gcagcagtaaccctcaagcccagttcccacggacggaaacaaaccgccggcgaggttgaa
gatggtgaagtcaaggataaccgaagtggaagatctggcgccgcctccggaagccaaaag
gactcagcttcgacaagaaacctccctactagggaaccactgaaggatgctaacccccca
caaaggtcaatgggaggtaatggaccgcctcctcggcctccagcacctaacgcaggtcct
ctaccaaccaaacttcctggaaaccgcagtgatgccaacagaacatcgacactaacctcg
ggcggccgtggcctgcccagcaatcctgatctgcctaggagaccagatgtgccaattccg
gaggttttcagcgccagccactttaaccgagcgcagcacaatatgaacaacagaagagag
cccgcttcatctagggacggtcgtgatacccgagagccgcgtgagactcgggagcctcgc
gaggcacatcctcgtgaaccgagggagcccgtgcatggtcgggatagcagagactaccga
gcgccggaaacgtcacgccctgaacggccgcgcgacttcccatcaaccgagaggcgtcct
gtggaaccgcctacaagggattcatctcgcccatccgatagggagtggccagcccgtgcc
gaaccgccaccccgttggaccgagcctacagctgcctctggacgtgatggccgacagcca
cgagacaggacgccccatggtactaaccggcacgatggaagactgtctagggaaaatgcc
aatgcggcatcctcagtagctgcgccatctcataatgacgctccagagccgcttatcaac
ccggagcgtgcgcgactcctagcagaagccgagcagaagcagtcacatcccaccccgccg
agagctgccgagccgcagcatcctcacatcaacccagcgagagctgctcttatcactgac
gttcgtgagccacaaggccgttcctcgtccagggatcaaacccgcgaacggcctccccgc
actgaatctcccagggcatctgaaaggtcggcaaccagtcaggccgatagcgctcgagac
gaacgtccgggtcgccatcgacaacactcggattaccacagcaccagaggtgacagtcat
gctcacggagacagcgggtcatcacacggacgcttggatcgccccgctgaaattgaaaga
ccaggaggatctagagatggttctttcaatcagcctcctcgtggcacggaccatgaccat
ggcagaccggtccaacaagatcccaactacggtaggctgaatcctatccagtcagtcgtc
gacagcgtgccggcaccagtaccggtagcaacttcggggtccggcggtccaccgccatcg
ggcccgcggggtcgtggcaggaacaacgctaggatgggtcctgctaacggagtcccaatc
cgtcctgacggccgattcccgggcatggaagctaaccgcacatcatcccccgatcgtcaa
cctccgactggtccttcgtcttcacgacagtcgcggagaggtcagtatgataatgcaggc
ggcaatgtcaacgcaacacctgtctctctgcccgctcaatctcccggcgtccatcctgat
cggatgagccacatcaatcagcaaccacagcaaggcggtgctcaatcaagtcagcaacaa
caatcacaagctggacctccgccacctccacccccaccaccttcggctccgggagttcac
cccgatcggttgaaccacatcaatcctgatcggttgacccaaatcagtggtccaccaagt
catcggccaactggtcctagtccccataaccggcctccgatcaataccccagaccggcct
tccatgcctgcacccaataccagcggacggcaacaaccatctggacagcatggctctaat
tttgccactcctaccggcccatcagcttctaacaatgaccgcatgaggtctggcggagga
agcagacagctccgtggtattcagaacatgcttgacaaggcatccatggacgcccgcggg
cctggttctcgcatgcgcggttcgtcaagacttaacactatggtggactcggatgctcaa
gtactggctggcgcatcacccggcaacacacctgtcaatgacaggcccgaccctctcaga
gacatccgcgagagcggttcgcgcagggacatgagcacggatcgtggcgatcgggaacgg
gaccgcggtagagacaccagagatcgggaatccagagaccgagagccacgcggtggtctg
gcgccgattcaagttgtcggtgacagccgtgaggattcctcggtggttccacatggcggt
cattcccgcagtgatgtgaacggagaaggatatgtttccagcagcagaggaggagccagc
ggtgatcacgagcgcggaagtagccgacaccatggctctcgctcggagagaagcgacagg
ccttctaggagaagcagccgcgagcgcaacaccggtggtggtggcggtgatgcgaaggag
tccagctctagaggcgactattcccgggaaagcaggagtcgtggaggcggcggcggcggc
ggcggcccatcaacggttaatgcacctggcggtcccagtgccgacctcgtcacgggtggc
tcttcccgtggtgaccggagatccggccgcgattcgaatgccggcagcggatctggtcac
agaggcggaggaggaggaaacatgcctcccccgccaccttcgagggaacccagtcatcgc
ggccatggcagccacagaggtggaggtgatggatcaggccacaaccagggtggagcgccg
cctatgggaggtggaaggaacgatggtcatggaggtaggccccctcgggaatcacgatcc
tctaggcctagcggacccggtggtggacaagatgacatgagaggaggtggtgatgacagg
tcaaggaagcggaggggtgacggggtaattgattcgtctcaggggcttggaggtcatcag
gacaagcggccgcgtcgctag
DBGET
integrated database retrieval system
