Sordaria macrospora: 10807287
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Entry
10807287 CDS
T01610
Symbol
SMAC4_00657
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
smp
Sordaria macrospora
Pathway
smp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
10807287 (SMAC4_00657)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smp03000
]
10807287 (SMAC4_00657)
03019 Messenger RNA biogenesis [BR:
smp03019
]
10807287 (SMAC4_00657)
04121 Ubiquitin system [BR:
smp04121
]
10807287 (SMAC4_00657)
Enzymes [BR:
smp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
10807287 (SMAC4_00657)
Transcription factors [BR:
smp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
10807287 (SMAC4_00657)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
10807287 (SMAC4_00657)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
10807287 (SMAC4_00657)
Ubiquitin system [BR:
smp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
10807287 (SMAC4_00657)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
SET_assoc
zf-RING_2
Baculo_IE-1
Nup35_RRM_2
zf-C3HC4_3
zf-UDP
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
10807287
NCBI-ProteinID:
XP_003349769
UniProt:
F7VMQ3
LinkDB
All DBs
Position
7:complement(join(1953050..1955961,1956738..1959016,1959082..1959194,1959281..1959347,1959534..1959580))
Genome browser
AA seq
1805 aa
AA seq
DB search
MAPSQDTFVDDEEETCPLCIEEFDLSDRNFKPCPCGYQICQFCFNNIRNNMNGLCPACRR
PYDDKTIQWKVVTQEEVAEFRANIQKNQKRRAAEQRHKEAQKREAEKENRKNLVGVRVVQ
KNLVYVTGLTPTVREDELLKTLRRPEFFGQYGNIQKISISNRKSQDGHNQSLGIYVTFEK
KEDAARCIQAVNGSQNGDRVLRAQLGTTKYCSAWLRHEICTNRQCMFLHELGDEEDSYSR
QDLSSINSISSQRPLPVGGASRSTSRQTGHPSPALSNAQPMIRSSSKEESENGDGPALPS
SATWARNPQVRSRRGSHATSGAAPSPAISNILPVTSESNREAVEDFPPIESTVHHPPPPP
QKTKSEKSPKSAAKPAPKATPSAPPAPPAEAASPAASPAPAPAPAPASAPAPAPAPAPAS
APASAPAPAPAPAPVTAPVAAPPPPKVETSAKSTFEKARSASQDTLTKLLKSLNGCSLAW
PKLGDDSTEANYPPLFDVRGGEKRRALRDDVTTGVAESHEGSAAATEPAEVEPESSGSLA
LGGEPEDRDTGRDFGLRGASQPPIQRANNDGLFGSAIGSGFSQGSTNLASIGSRTMTPQQ
PAFMRPQATGYDHLPPGITSQANLFQGQGHNRQGSRFSFANEGQTASATSVKLAANPRVM
AQQASMMPSSFHAQPNTQFYASSMPGPPPGLKSTSTPPSMFGQHGFGSAFGNTTKDTNEI
LQLLSRGRGAGSQVHDAGKREFLFPSIPPLYPPSTSSTPAPAPGLASLYGPQPGAFQDLG
SKQKKKGKKHRHANTSSSGGSGLVDLADPSILQARMQSQQHMQQQSNAGLGQVFGDDDLP
SFEEVTTSVDALVSDEPITTIRQPPGAFDNFGRMGTPTTVAPPPGLGHISHPSPAILQAS
LPAGTQTPPVGVPVVPTKATTAAASTAASTAPPTSTPATATASSAAVSTAASTTSTPTTA
PSPLVNKKPRNKLERGMQYCPFCAMDLPLAKDGKTINVLEAERHIDSCEDAKKLRDAAEA
KKNSKENIQALAAETGLSKDIATAKAKGPKVLADEDFPALNSPKVQAAATTPAVSTKITA
TKSKAARKAERAAEKAAEKAAERERAAEKEKAEKEKAEKEKAEEEKAEKEKAEKEKAEKE
KAEKEKAAQKEKPAPVLVIPAVAPTLPKPEPRPTDKKPAPVLNIAAATKVAQVRTAESSS
ATTEKSAHDRDSAFPALPTPTTASVASPLARTTAKTLRLVSTPKTETPSTLANATATSVV
GSAARSVASISVRPETPASEMISDSASIVSASVSASRTSSPPPSKIGSAPVRTTTKSQQR
KARKEQLKKETAIVAAQPVKSDPNEEIGPIIGRKKKQKKEKEKPSTTTANVTPTVSRPET
PAQKEKEATPPPPPPKEVKEVKEVKEVKEESSTYRSTANETTTLTDDASPIKTRGVKETP
KSDSVSTPRTLPTPATIFQDLQKSGEVPEKIDDLSLFKPTSTGFEKSRNDHSNAAARENA
ARNAMTPTKSIVTDEDQAALLAGHPVRKMIDGVRILLTPNGDCIRNLTEEEEDRFLELQA
RIAETASSPAAFVSSRHEAGGGFSLIKGRAVPNGPPGYFPQAPGQYPTDPVNKIQREEAI
YYINQYVLPRLNLNARDMSFPKAMSNWHPDQRGGNPAAAGLSSLAPWMYGAGSPASPHDN
DAVAPEISYPAPVSAFADAHGSYLDMPPSPSVSALDDPMGHKGAGLNIGGAPGPFGNVPL
MSLEDAESALSAARKEGDKIEKHFNQTIRKNKRLLMAVGGNPVSVGGGGANGAGGGGGGG
GGGAH
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggcgccctctcaagataccttcgtcgacgatgaagaagagacctgccccctctgtatc
gaggagtttgatctttcggatcgcaacttcaagccatgcccctgcggataccagatctgc
cagttctgtttcaacaatatccgaaataatatgaatggtctttgtcccgcgtgccgcaga
ccatacgacgacaagactatccaatggaaggtcgtcactcaggaagaggttgccgagttc
cgagcgaatatccaaaagaaccaaaagcgacgtgccgccgagcaacgccacaaggaagcc
caaaaacgcgaagccgaaaaggagaatcggaagaacttggtcggcgtccgagtcgttcag
aaaaacctggtctacgtaaccgggctgacgcctacggtacgcgaggacgagttgctcaag
acactccggcgtcccgagttttttggacaatacggcaatatccaaaagatatccatcagc
aatcggaagagccaagacgggcacaaccagtccctcggaatttatgtcactttcgagaag
aaggaggatgctgctaggtgcattcaagcagtcaatggctcgcaaaatggcgacagggtt
ctgagagctcaactgggcaccaccaagtattgttcagcttggctccgtcacgagatttgc
acaaacaggcagtgtatgttcttacacgagcttggtgacgaggaggacagctattctcgc
caggacttgtcttcgataaacagcatcagcagccaacgccccctccctgttggcggtgcc
tcaaggtcgacgtctcgccaaacgggccacccatcgcccgcgctctcgaatgctcaaccg
atgatccggagttctagcaaggaggaatccgaaaacggcgatggccccgcgctgccctct
tcagctacttgggctcgaaacccccaggtccgtagccgacgtggaagccacgccactagc
ggcgccgcccccagccctgcaatctcgaacattcttccagtcacttccgaatccaaccga
gaagccgtcgaagatttccctccgatcgagagcacggtgcatcatcctccacctcctccc
cagaagacgaaatccgaaaagtcgcccaaatctgcggcaaagcctgcgccaaaggctact
ccttctgctcctcctgctcctcctgctgaggcagcttccccagctgcgtctccagctccg
gcaccagctccggcaccagcttcggcaccagctccggcaccagctccggcaccagcttcg
gcaccagcttcggcaccagctccggcaccggcgccggcccctgttactgctccagttgcg
gctcctcctccacccaaggttgagacatccgccaagtccactttcgagaaggccaggagc
gcttcccaagatacgcttacaaagcttctcaaatccctcaatgggtgctctcttgcctgg
cccaagcttggagacgactctacagaggctaactacccgcctttgtttgatgtgaggggt
ggcgagaagcggagagctttgcgcgacgatgtcaccaccggcgtggcggagtcacatgag
ggttccgcggcagctaccgaaccagctgaggtcgagcctgaaagcagtggcagccttgct
ttgggaggtgaacctgaggaccgggatactggacgtgattttggcttgcggggagcttca
cagccgcccattcaacgcgctaacaacgacggactgtttgggtcggcgatcgggtctggc
ttcagccagggttctaccaacctcgcatccattggcagtcgcaccatgacaccacagcag
cctgctttcatgcgtccgcaggcgacgggttacgatcaccttcctcccggaatcacttcc
caggcgaaccttttccaggggcaggggcataaccgccagggctctcgctttagcttcgcg
aacgaggggcaaacagcgtctgccacctcggtcaagctggcggcaaaccccagggtcatg
gctcagcaggcctcgatgatgccttcgtccttccacgctcaacccaacacgcagttctat
gccagctccatgcccggccctccgcccgggctcaagtctacgagcacccctccgagcatg
tttgggcagcacggtttcggctctgctttcggcaacaccacgaaagatacgaacgagatt
cttcagctcctcagccgcggccgaggtgctggtagccaggttcatgatgcgggaaagcgt
gagttcttgtttccttccattcctccactgtacccaccctctacctcctctaccccagct
cctgctccgggcctggcatcgctctacgggccccagcctggagccttccaagacttgggt
tcaaagcagaagaagaaggggaagaagcacagacacgctaacacttcctcctctgggggg
agtggcttagtagatcttgcggacccgagtatcttgcaggcgagaatgcagtctcagcag
catatgcaacaacagagcaatgccggtctcggacaggtgtttggtgatgacgatctaccc
tcgttcgaggaagtcacgacaagcgtagacgctctggtttcggacgaacccattacaacg
atacgccaaccccccggagccttcgataacttcggccgcatggggactcctacaaccgtt
gcccctcctccgggactgggtcacatcagccatccttcccctgccatcctccaggcatct
ttgccagctggaactcagacaccaccggtcggcgtacctgttgtgcctaccaaggcaacc
acagcggcggcgtctacagcagcgtctacggcaccacctacgagtacacccgcaacggca
acggcctctagtgcggctgtttccacggcagcgtcaaccacgtcaacgcctacaacagct
cccagcccacttgtcaacaagaagccgaggaacaagttggaaagaggcatgcaatactgt
cccttttgcgcaatggacttgcctcttgctaaggacggcaagaccattaacgttttggaa
gcagagagacacattgattcgtgcgaagatgccaagaagcttcgtgacgcagctgaggcc
aagaagaactccaaggagaatattcaagctcttgcggcggaaactggtctatcgaaggat
attgcaacggccaaggcgaagggaccaaaggttttggcagacgaggacttccctgctctc
aatagtcccaaggtccaggcagctgccacgacacctgccgtttcgaccaagattacggca
accaagtctaaggcagccaggaaggccgaaagggctgcggagaaggctgctgaaaaggct
gctgaaagggagagggctgctgagaaggagaaggccgagaaggagaaggcggaaaaggaa
aaggccgaagaggaaaaggccgaaaaggagaaggccgaaaaggagaaggccgaaaaggaa
aaggccgaaaaggagaaggctgcccagaaagagaagcctgcacctgtgctggttatacct
gcggtggcgcccactcttcctaagccagaaccccgccctacagacaaaaagcctgcccca
gttcttaacattgccgcagccaccaaggttgcccaggtcagaactgctgagagttcatca
gcaacgacggagaaatctgcccatgatcgggactcggctttccctgccctgcctacgcca
acgactgcttcagtggcctcgccgctcgctcggacaacagcaaagacactaagacttgtc
tcaactccgaagaccgagacgccttctacgctcgccaacgctactgccacgagcgtcgtg
ggctccgcggctcgttctgtggcttcgatttccgtgagacccgagactcctgctagcgag
atgatttcggatagtgcgtccatcgtctcagcctcagtctcggcatctcgcaccagctcg
ccaccgccgtcaaagatcggttctgcccctgtcagaacgaccaccaagagtcagcagcgg
aaggcaagaaaggagcagctcaagaaggaaacggcaattgtagccgcccagcccgtcaag
tctgatccgaatgaggagatcggacccatcattggccgcaagaagaagcagaagaaggag
aaggagaagccaagcaccaccaccgcaaacgtaacaccgactgtcagtagaccggaaaca
cctgcacaaaaggaaaaggaggcgacgcctcctccgccacccccaaaggaagtgaaggag
gtcaaggaggtcaaggaggtcaaggaggagtcttccacgtaccgatcgacggccaatgag
acgacgacattgacggatgacgcttctcctatcaagacgaggggagtgaaggagaccccg
aagtcggactccgtctcaactcctcgcactttgccgacacctgccacgatcttccaagat
ttgcaaaaatcgggtgaggttccggagaagatcgatgacctgtctcttttcaagccgaca
agcaccggatttgagaagtcaaggaatgatcatagcaacgctgctgccagggaaaacgcg
gctcggaatgccatgacgcctaccaagtcgatcgtgactgacgaagaccaagcagctctg
cttgcgggtcaccccgtccgcaaaatgattgatggcgtccgaattcttctgactcccaac
ggcgactgcattcgcaacctgaccgaagaggaggaggatcgtttcttggagcttcaagcc
cgcatcgctgagaccgcctccagccctgccgcgtttgtttcctctcgccatgaagccggc
ggtggtttcagtctgatcaaggggcgtgctgtgcccaacggccctccgggctacttccct
caggctcctggtcagtacccaacagatccggtgaacaagatccagcgggaggaggcgatt
tactacatcaaccagtacgtcctcccgcggctgaacctcaatgccagagacatgagcttt
ccgaaagccatgtcaaactggcacccggatcagcgtggcggtaacccagccgccgcgggc
ctcagctcgctcgctccctggatgtacggtgccggctctcccgcgtcaccgcacgacaac
gacgccgtggcacccgagatcagctatccagcccccgtaagcgcgttcgccgacgcacat
ggttcctacttggacatgcctccttcaccgtctgtatctgctcttgatgaccccatgggt
cataagggtgcaggcctcaacatcggcggtgctcccggcccgttcggcaacgtgcctctg
atgagcctcgaagacgccgagtcggctctgtcggctgcccgcaaggagggcgataagatc
gagaagcacttcaaccagaccatcaggaagaataagagactcttgatggccgtgggcggc
aatcccgtctcggtaggcggaggcggcgctaatggtgctggcggtggtggtggtggaggc
ggcggcggcgcgcattga
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integrated database retrieval system
