Sordaria macrospora: 10807956
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Entry
10807956 CDS
T01610
Symbol
SMAC4_02116
Name
(RefSeq) uncharacterized protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smp
Sordaria macrospora
Pathway
smp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
10807956 (SMAC4_02116)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smp03041
]
10807956 (SMAC4_02116)
03009 Ribosome biogenesis [BR:
smp03009
]
10807956 (SMAC4_02116)
Enzymes [BR:
smp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
10807956 (SMAC4_02116)
Spliceosome [BR:
smp03041
]
Complex A
U1 snRNP components
U1 related factors
10807956 (SMAC4_02116)
Complex B
10807956 (SMAC4_02116)
Ribosome biogenesis [BR:
smp03009
]
Eukaryotic type
Pre-60S particles
Helicases
10807956 (SMAC4_02116)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Glyoxalase_3
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-GeneID:
10807956
NCBI-ProteinID:
XP_065946953
LinkDB
All DBs
Position
4:complement(join(4318393..4318571,4318643..4318771,4319273..4320504,4320620..4320747))
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AA seq
555 aa
AA seq
DB search
MSGSYGGGGGGGGYGGRGGGGGGYSNGYDRNGAGYSNNYSSHGGSNGYSGGGGGYGGGGG
GYGGGGGGGYGGGGGGGDRMSALGAGLQKQDWDMGTLPKFEKSFYQEHPSVANRSAAEVD
KFRADHSIAIFGNDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDV
VGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSS
RIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRML
DMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRIT
QIVEVVSESEKRDRMIKHLEKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIH
GDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRT
GRAGAKGTAITFFTTDNSKQARELVGVLQEAKQQIDPRLAEMARYSGGGGGGRFGGYRGR
GGGGGWRGGKSFSRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtccggatcttacggtggcggcggcggcggcggtggctacggtggccgcggcggcggt
ggtggtggatattccaacgggtacgatcgcaatggtgccggctactctaacaactactcc
tcacacggtggctcgaacggctactccggcggcggcggaggatatggcggtggtggtggt
ggctacggaggcggcggcggcggcggctacggtggtggcggcggcggtggtgacaggatg
tctgctctcggtgccggtctgcagaagcaggattgggacatgggcactctccccaagttt
gagaagtccttctaccaggagcaccccagcgtcgccaaccgctctgctgccgaggttgac
aagttccgcgccgaccactctattgccatcttcggtaacgacgtccccaagcctgtcgag
accttcgacgaggctggtttcccccgctacgttatggatgaggtcaaggctcagggtttc
cctgctcctaccgccattcagtcccagggttggcccatggccctctccggtcgcgatgtc
gtcggtattgccgagaccggttccggaaagactctcacctactgccttcccgccatcgtt
cacatcaacgctcagcctctcctcgctcccggcgacggtcctatcgtccttatcctcgcc
cctacccgtgagttggctgtccagattcagcaagaaatctccaagttcggcaagtcatcc
cgcattcgcaacacctgcgtctacggtggtgtccccaagggtcctcagatcagagatctt
tctcgcggtgttgaggtctgcattgctacccctggccgtttgatcgatatgctcgagtct
ggcaagaccaacctccgtcgtgtcacctacctcgtcctcgatgaggctgatcgcatgttg
gacatgggtttcgagccccaaattcgcaagatcattggtcagattcgccctgatcgtcag
actctcatgtggtccgctacctggcccaaggaggtccgcaacttggcctccgacttcttg
accaacttcatccaggtcaacatcggttccatggatttggctgccaaccatcgcatcact
cagatcgtcgaggttgtttccgagtccgagaagcgcgatcgcatgatcaagcatctcgag
aagatcatggagggccgcgagaacactaacaagattctcatcttcaccggcaccaagcgt
gttgctgacgatattacccgcttcctccgccaggacggctggcccgctctttccatccac
ggtgacaagcagcagaacgagcgtgattgggttttggaccagtttaagactggcaagagc
cctatcatggttgccaccgacgtggcttctcgtggtatcgatgtgcgcaacattactcac
gtgctcaactatgactaccccaacaactccgaggattacatccatcgtatcggccgtact
ggtcgtgccggtgctaagggtactgccattaccttcttcaccactgacaactccaagcag
gctcgtgagctcgtcggtgtccttcaagaagctaagcagcagattgaccccagacttgcc
gagatggctcgctacagtggtggtggtggaggtggccgcttcggtggctatcgcggccgt
ggcggcggcggtggatggcgcggtggtaagtcattttcacgcaggtga
DBGET
integrated database retrieval system
