Sordaria macrospora: 10808261
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Entry
10808261 CDS
T01610
Symbol
SMAC4_02370
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
smp
Sordaria macrospora
Pathway
smp03008
Ribosome biogenesis in eukaryotes
smp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
10808261 (SMAC4_02370)
09123 Folding, sorting and degradation
03018 RNA degradation
10808261 (SMAC4_02370)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smp03021
]
10808261 (SMAC4_02370)
03019 Messenger RNA biogenesis [BR:
smp03019
]
10808261 (SMAC4_02370)
03009 Ribosome biogenesis [BR:
smp03009
]
10808261 (SMAC4_02370)
03016 Transfer RNA biogenesis [BR:
smp03016
]
10808261 (SMAC4_02370)
Transcription machinery [BR:
smp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
10808261 (SMAC4_02370)
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
10808261 (SMAC4_02370)
Ribosome biogenesis [BR:
smp03009
]
Eukaryotic type
Pre-60S particles
RNases
10808261 (SMAC4_02370)
Transfer RNA biogenesis [BR:
smp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
10808261 (SMAC4_02370)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
10808261
NCBI-ProteinID:
XP_065947237
LinkDB
All DBs
Position
5:complement(join(2884519..2887448,2887523..2887832))
Genome browser
AA seq
1079 aa
AA seq
DB search
MGIPAAFRWLSTKYPKIISPVVEDQPITMPDGTVIPVDCTKPNPNGEEFDNLYLDMNGIV
HPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RAAREAMEKEEDKQKFVELLKKQNGNMIQQEEPVETVVKKAFDSNSITPGTPFMDILAAS
LKYWCSYKLNTDPAWANMKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLD
ADLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEKD
AVIPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPAL
EIRENGIDTLTAIWKDNLPVMGGYLTKDGQADLERVQYIMAGLAKQEDAIFRRRKEAEDR
REAGFKRRKLADEARQRRAQGSRQIRQAAENSGPPAGFSFHKINEFPGKVPQPSITHDMV
VNRQAVDQANVANKSAASVLKDQLKSLMAQGKSAPETGAESTETPADTAAAPEAAATEEQ
AAPPTALGKRKAELIEDAATGPEASSSEVTEVSENDAEPNDSVRLWEEGYADRYYEQKFK
VDRKDIDFRHKVGRAYAEGLAWVLEYYFQGCPSWEWFYPYHYAPFAADFVDLGKMEIKFE
KGRISRPFEQLMSVLPAASRHAIPEVFHPLMTEENSEIIDFYPEEFEIDLNGKKMAWQGV
ALLPFIDMPRLLSAMETKTHLLSPEDQLRNTPGKDFLLLSDSHPTLYEHITSQFYSKKQG
ATKFELDPTKSAGLSGSVEKIDGYVPHGSLVYPLSRASMPDVDYDRSLMVYYFFPDCSHT
HKSMLLRGVQMPTPALTRSDIDILKGKASRSGRSYGGVPLSNKGYSGRNEPINYGPGGGY
QGGGRGRGGYQGGGGRGGGRGGGYGGNGGGYQGNGGGYHNGGNNGGGGYGGQPRDSYGPP
PGWQPPPPPGLAGFGVGPPPPPPGAAYGGAPGAGGYGGGGYGNSRGGYQDNRYALPPPPA
QGAYQGQGQQYGQGGGRGGYQGQGNQYRGPPRQDRGGYDNRGGYGGGGYRGGGDNRGYR
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgggtattccggcggctttcaggtggctgtccaccaaatatcccaagatcatatcgccc
gtcgtcgaggatcagccgattactatgcctgatggcaccgtcatccctgttgactgcacc
aagccgaaccccaatggcgaggagtttgacaatctctatctcgacatgaacggtatcgtc
catccttgctcccatcccgaggaccgccccgcccccaaggacgaggaggagatgatggtc
gaggttttcaagtacaccgatcgcgtggtcaatatggttcgcccgcgcaagctcctcatg
attgctgttgatggcgttgccccaagagccaagatgaaccagcaacgatccagacgattc
cgtgccgcccgcgaagccatggaaaaggaagaagacaagcaaaagttcgtcgagctgctc
aagaaacagaatggcaacatgatccaacaggaagaacccgtagagaccgtcgtcaagaag
gctttcgattccaattccatcactcccggtacacccttcatggacatactcgctgctagt
ctcaagtattggtgttcttacaagctgaataccgatcctgcgtgggccaacatgaaggtc
atcatctctgacgccactgttccgggtgagggtgagcacaagatcatggagttcgtccgc
tctcagcgtgggtctcccaaccatgaccccaatactcggcatgtcatctacggacttgac
gccgatctcatcatgcttggcttggccacgcacgagccccatttccgtgtattgcgtgag
gatgtctttgcgcaagacagcaggccgagattgtgcaagatctgtggccaaaagggacat
gacgccatgaactgcaagggtgaggcaaaggagaagaatggcgagttcgacgagaaggac
gcagtcattcctctcaagccctttatttggctccacgtttccattctccgtgagtacctt
gctattgaacttgacgttcctggccttcccttccagttcaacttggagagagccatcgac
gattgggtcttcatgtgcttctttgtcggaaacgatttcttgcctcacttgcctgcattg
gagatcagggagaacggaatcgatacccttacggcaatctggaaagacaacttgcccgtc
atgggcggatatttgaccaaagatggccaagcggatcttgaacgcgtccagtacatcatg
gccggcctggccaagcaagaggacgccattttcaggaggagaaaggaagccgaagaccga
cgagaggccggattcaagaggcgcaagcttgccgacgaggcccgccaaaggagagcccag
ggcagcaggcaaatacgccaagcggctgagaacagtggtccgccagctggattttctttt
cataagatcaatgagtttccgggcaaggtaccgcaaccttcaattactcatgacatggtg
gtgaaccgccaagcggttgaccaggccaatgttgccaacaagagtgctgctagcgtgctc
aaggatcagctcaagagcctgatggcccaaggaaagagcgcgccagaaacgggtgccgag
tccacggagactcctgctgacactgctgcggctccggaggccgccgccaccgaggagcaa
gctgctcccccaacagcccttggaaagagaaaggccgagcttatcgaagacgctgccacc
ggccctgaggcgagcagttccgaggtgactgaggtcagcgagaatgatgctgagcctaac
gattctgtcaggttatgggaagagggctatgcggaccggtactatgagcagaagttcaag
gttgaccgtaaggatattgacttccgtcataaggttggtcgcgcgtatgccgaaggtctt
gcgtgggttttggagtattatttccagggttgcccctcctgggagtggttctacccctac
cattacgcgccattcgctgcggactttgttgatcttggtaagatggagatcaagtttgag
aagggcagaatctcgcggccctttgagcagctcatgagcgttctcccggccgcgtctcgc
cacgctattcctgaggtgtttcaccctttgatgactgaggagaacagtgagatcatcgat
ttctaccccgaggagtttgagatcgatctcaacggcaagaagatggcttggcagggtgtc
gccctccttccgttcatcgacatgccccgtctgttgtctgcaatggagaccaagacccat
ctcttgagcccagaggatcagctccggaacacaccgggcaaggactttttactcttgtct
gattctcacccaacactgtacgaacacatcacgagccagttctattccaagaaacagggc
gccaccaagttcgagctggatcctaccaagagtgccggcctctcgggttcagtcgagaag
attgatgggtatgtacctcacggctcgctggtgtacccgttgagcagagcctcgatgcct
gatgtggactacgatcgctcgctcatggtctactacttctttcctgattgctcgcatacg
cacaagtcgatgctccttagaggggtgcaaatgcctacaccggctttgactcgcagcgat
atcgacatcctgaagggcaaggcatcacgctcgggaagaagttacggaggtgtaccgctg
agcaacaagggctatagcggaaggaacgagcccatcaactacggacctggcggtggctat
cagggaggaggacgcggccgtggcggataccaaggaggaggaggacgtggtggcggcagg
ggaggagggtatggcggaaacggtggcggctaccagggcaatggtggcggttatcacaac
ggcggtaacaacggcggcggcggatacggtggtcaaccacgcgattcatatggtcctccc
cccggctggcagcctcctcctccccctggacttgccggattcggagttggacctcctccg
cctccgcccggtgccgcctatggcggtgctcccggtgctggtggatacggcggtggcggt
tacggcaacagccgcggagggtatcaagataacagatatgcactcccccctcctccggcg
caaggcgcgtatcagggccaaggacagcagtacggtcagggcggtggtcgcggcggctac
cagggccagggtaaccagtacaggggacctccgcgtcaggaccgtggcggatatgacaac
cgcggaggttacggcggcggtggatatcgtggcggcggtgacaaccgggggtataggtaa
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integrated database retrieval system
