KEGG   Sordaria macrospora: 10808530
Entry
10808530          CDS       T01610                                 
Symbol
SMAC4_04264
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
smp  Sordaria macrospora
Pathway
smp03013  Nucleocytoplasmic transport
smp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    10808530 (SMAC4_04264)
  09122 Translation
   03013 Nucleocytoplasmic transport
    10808530 (SMAC4_04264)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smp03019]
    10808530 (SMAC4_04264)
   03041 Spliceosome [BR:smp03041]
    10808530 (SMAC4_04264)
Messenger RNA biogenesis [BR:smp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     10808530 (SMAC4_04264)
Spliceosome [BR:smp03041]
 Complex C
  Other components
   EJC/TREX
    10808530 (SMAC4_04264)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    10808530 (SMAC4_04264)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40 Beta-prop_WDR3_1st WD40_Prp19 ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd Beta-prop_Aladin WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_EML Beta-prop_HPS5 DSE1_N eIF2A Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 TP_0598_N Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th Beta-prop_Nup120_160 KNTC1_N CFAP251_N Cytochrom_D1 Beta-prop_ACSF4 PALB2_WD40 PD40 Beta-prop_SPT8 ASA1 B-prop_COPA_B_2nd PAC11 Beta-prop_WDR41 Beta-prop_DCAF4 SHKBP1_KCTD3_C
Other DBs
NCBI-GeneID: 10808530
NCBI-ProteinID: XP_003350960
UniProt: F7W1C2
LinkDB
Position
1:complement(join(3571994..3572157,3572217..3572261,3572317..3572692,3572747..3573059,3573132..3573262))
AA seq 342 aa
MAPLLRPRYSLSKDKFPAYFGPLKSQSYNDTTSGPRGGGGSHHSLSTIAWNPLGTLIATG
AIDKTLRVWNPEKPNVKFSTELKGHAAPIEKVAFNPVKDAELCSVSSDGAVKIWDVRTKA
CVNEVKVSGHATSLAWAPDGSSLLVGSKNGDLFHILPSQSSIVSTHHQPVGTNQMAFCWS
GDKVFLPTSEGRIRILSYPDFEPVLHVNHAVPEGEPTEFTLKGHTASCLTAELSPTGKYL
ATGGADSIIALFDTKDWICQRTVTRMVGPVKSISFTFDGSYVVGGCEEGGSLEVTHTETG
EHVHTFKTAGACEAVAWAPTRYCLAYSDLGVLRIIGVDTDRK
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccgctcctacgccccagatatagcttgtccaaggataagttcccggcatacttt
ggacctttgaagagccagtcctacaacgacaccacctctgggcctcggggcggtggtgga
agccatcacagcctaagcacaatagcatggaacccgttgggaactcttattgccactggt
gctattgacaagacacttcgcgtctggaatcccgagaagcccaatgtcaaattctcaact
gaactcaaaggtcatgctgctccaattgaaaaagtcgccttcaatcccgtcaaggatgca
gagctctgcagcgtcagcagcgatggcgctgtcaagatctgggacgtaaggaccaaggca
tgtgtcaacgaggtcaaggtttctggacacgccacgtccctggcctgggctcctgatgga
tcctcgttactcgttggtagcaagaatggcgatctgttccacatcctgccctctcagtct
tccatcgtttcgacccaccatcaaccggtcggtacaaaccagatggccttctgttggagt
ggcgacaaggtgttcctgcccaccagcgaaggaaggatacgcattttgtcctaccctgac
tttgaacctgtcctgcatgttaatcacgccgtcccagagggcgagccaaccgaattcacg
ctcaaaggccatacggcttcttgcctaacggctgagctctctcccaccggcaaatacctg
gcaacgggaggcgccgattccatcattgccttgtttgataccaaagactggatctgccag
cggacagtaacccgcatggttgggcccgtcaagagcataagcttcacatttgatggtagt
tatgtggttggtggctgcgaagaaggtggtagcttggaagttactcatacagagacgggc
gagcatgtccacaccttcaagacagccggtgcttgtgaggcagtggcatgggcacctact
agatactgccttgcttacagtgatctaggcgtactccgcatcatcggcgtggacactgat
aggaagtga

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