Sordaria macrospora: 10808555
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Entry
10808555 CDS
T01610
Symbol
SMAC4_04290
Name
(RefSeq) uncharacterized protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
smp
Sordaria macrospora
Pathway
smp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
10808555 (SMAC4_04290)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smp03041
]
10808555 (SMAC4_04290)
Enzymes [BR:
smp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
10808555 (SMAC4_04290)
Spliceosome [BR:
smp03041
]
Complex C
Other components
Step II factors
10808555 (SMAC4_04290)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
SRP54
SLFN-g3_helicase
AAA_30
ATPase
T2SSE
Flavi_DEAD
AAA_16
PhoH
ABC_tran
AAA_7
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
10808555
NCBI-ProteinID:
XP_003350986
UniProt:
F7W1E8
LinkDB
All DBs
Position
1:complement(3466059..3469076)
Genome browser
AA seq
1005 aa
AA seq
DB search
MGHDDDDDRSFKRRKIDFNPLRSDDRFSDLPSRAPHKGSRGTNGNNGSLNSRASTPRVGS
KYGGGETPRQNEFDGPKPGVNDDDATNALDRDWYGGDDDLGGHTFGDDSHNPFGDEGAWA
AQEREAALAEKKIGQMARGMSARQIQKQKDVDAWETNRMLTSGVAQRRDLGQDFEDDQEG
TRVHLLVHDLRPPFLDGRTIFTKQLDPVPAVRDSQSDMAVFARKGSKVVRERRTQRERQR
QAQEATKVAGTALGNLMGVKEEDTDSALPIAVEEVGKSKNMNKFSEHMKKEEGASNFSQT
KSLREQREFLPAFAVREDLLRVIRDNQVVIVIGETGSGKTTQLTQFLYEDGYGKTGMIGC
TQPRRVAAMSVAKRVAEEMEVKLGSTVGYAIRFEDCTSKDTVIKYMTDGVLLRESLNEPD
LDRYSCVIMDEAHERALNTDVLMGLFKKILQRRRDLKLIVTSATMNAKRFSDFYGGAPEF
TIPGRTFPVDIMYHRSPVEDYVDQAVQQVLAIHVGKPAGDILVFMTGQEDIEVTCELIRE
RLDALNDPPKLSILPIYSQMPADLQAKIFDRAAPGVRKVIVATNIAETSLTVDGIMYVVD
AGYSKLKVYNPRMGMDTLQITPISQANAMQRAGRAGRTGPGQAYHLFTEKAFKDEMYMQT
IPEIQRTNLSNTVLLLKSLGVKDLLDFDFMDPPPQDTISTSLFDLWALGALDNLGELTDL
GRKMNAFPMDPPLAKLLITSEEYGCSEEMVTIVSMLSVPNVFYRPKERQEESDAAREKFF
VPESDHLTYLHVYTQWKANGYNDGWCVRHFLHSKSLRRAKEVREQLLDIMKMQNMKMMSC
GTDWDVIRKCICSGYYHQAAKVKGIGEYINLRTSVTVQLHPTSALYGLGFLPDYVVYHEL
ILTSKEYMSTVTSVDPHWLADLGGVFYSVKEKGYSAREKRITETEFNRKMEIEAQMAADK
KRQEDQLHEEEELQLVKKAAPSKDKKVVKSGAVVKPARKRAGRGF
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgggtcacgacgatgatgacgaccggtcctttaaacgacgaaagatcgatttcaaccca
cttcgctccgatgaccgtttctccgatctcccgtcgcgcgcgccacacaagggctctagg
ggtaccaatggcaacaatgggtccttgaactcccgagcttccacccctcgtgtcgggtcc
aaatatggtggcggagagacacctcggcagaacgagtttgacggccccaaacccggcgta
aacgacgacgacgcaaccaatgccctcgaccgagattggtacggcggtgacgatgacctc
ggcggtcacacgtttggtgatgacagccacaaccccttcggcgatgaaggcgcttgggcg
gctcaggaaagggaggcggccctggcggaaaagaagatcgggcagatggcgcgcggtatg
agcgcacggcagatacagaagcaaaaggatgtcgacgcctgggagacaaaccgaatgctc
acttcaggcgtcgcgcaaaggagggatctggggcaagatttcgaggacgaccaggagggt
accagagtgcatctcctagtgcacgacctacgacctcctttcctggatggacgaaccatc
ttcacaaagcagttggaccctgtccccgccgtgcgcgattctcagagtgatatggctgtc
ttcgctcgaaaaggaagtaaggtggtcagggaaaggaggacgcaacgcgagcgccaaaga
caggcgcaggaggccaccaaggtagcgggaactgctctaggcaacttgatgggagtcaag
gaggaagataccgacagcgccctccctatcgcggtggaggaggtcggcaagagcaaaaac
atgaacaagttcagtgagcatatgaagaaggaagagggtgccagcaatttcagccaaacc
aagtccttgagagagcagcgcgaattccttcctgcttttgctgtacgagaagacctgctg
cgcgtcatccgtgacaatcaggttgtcattgtaattggagaaacaggctctggtaaaacg
acacaacttacccagtttctctacgaggacggttacggcaagacgggcatgatcggttgc
acccagcccaggagagtcgcggctatgagtgtagcgaagcgtgttgccgaggagatggag
gtgaagcttggcagcacggtaggctatgccatccgcttcgaggactgtaccagcaaggat
acggttattaagtacatgacggatggtgttcttctacgcgaatcgctgaatgaaccagac
ctggaccgctactcctgcgttatcatggacgaagcccacgaaagagctttaaatacggat
gttttgatgggattgttcaagaaaatcctccaaaggcgccgtgatttgaagctaattgtc
acgtctgcgacgatgaacgcgaagagattttccgacttctatggcggcgcacccgagttc
accatccccggaagaaccttccccgtggacatcatgtaccatcggtcacctgtggaggat
tacgtggaccaggctgtgcagcaagttctagcgattcatgtgggaaaaccagcaggcgat
atcctcgtcttcatgaccggccaggaagatattgaggtcacctgcgagctcatccgcgag
cggctagatgctctcaacgatccgccgaaactcagtattcttcccatttacagtcaaatg
cccgcagacttgcaggccaagatattcgacagggccgctccgggagtccgaaaggtcatc
gtggccacgaatattgcggaaaccagtttgactgtggatggtatcatgtacgtggttgat
gcaggatattccaagctcaaggtatacaacccacgaatgggtatggatacccttcagatt
acgcctatttcacaagcgaacgccatgcagcgtgctggtcgcgccggtcgcactggacct
ggtcaagcatatcatctgttcaccgagaaggccttcaaagatgagatgtacatgcagacc
atcccggagattcagagaacgaacttgagcaataccgttctgctcctcaagtcgctcggt
gtcaaagacctccttgatttcgactttatggatcctccacctcaggataccatcagcaca
tcgctgttcgatttgtgggcgttgggcgcactagacaaccttggagagctcaccgaccta
gggcgcaagatgaacgccttcccaatggatccgcctcttgccaaactgctcatcacgtcg
gaggaatacggatgcagcgaggaaatggtcaccattgtttcgatgctctccgttcccaac
gtgttttaccggccaaaggaacgacaagaagagtcagatgcggctcgcgagaagttcttt
gtaccggaatcggaccacttgacctatctgcacgtctacacacagtggaaggccaacggg
tataacgacggttggtgcgtgcgacactttttgcactccaagtcgcttcgtcgggccaag
gaagttcgcgaacagcttctggatattatgaagatgcagaatatgaagatgatgagctgc
ggcaccgactgggatgtcattcgcaagtgcatttgctctggctactaccaccaggcagca
aaggtcaagggcatcggcgagtacatcaacctgaggacgagtgtcaccgtccaactgcac
ccgaccagtgcactctatggactgggcttcttgccagactatgtggtgtaccacgagctt
atcctcacaagtaaagagtacatgtcaacggtcacctcggtggaccctcactggttggcg
gatctcggtggtgtgttctattcggtcaaggagaaaggatattcggcacgggagaagagg
atcacggagacggagttcaacaggaaaatggagattgaggcacagatggcagcggacaag
aagcgacaagaggaccagctgcacgaggaagaagagcttcagcttgtgaagaaggcggcc
ccatcgaaggacaagaaagtggtcaagtcgggtgctgtggtaaaaccggccagaaaacgc
gctggaagggggttctag
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