Staphylothermus marinus: Smar_0540
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Entry
Smar_0540 CDS
T00485
Name
(GenBank) peptide chain release factor subunit 1 (aeRF-1)
KO
K03265
peptide chain release factor subunit 1
Organism
smr
Staphylothermus marinus
Pathway
smr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Smar_0540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0540
03012 Translation factors [BR:
smr03012
]
Smar_0540
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Smar_0540
Translation factors [BR:
smr03012
]
Eukaryotic type
Release factors
Smar_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
acVLRF1
eRF1_1
baeRF_family10
Motif
Other DBs
NCBI-ProteinID:
ABN69647
UniProt:
A3DLY7
LinkDB
All DBs
Position
540995..542083
Genome browser
AA seq
362 aa
AA seq
DB search
MYVDRRQLREIIKELKKWSAPATVLLSLYIPPGRPVSDVLNMLRQELSITDNIKLKKTRS
AVQRALKAAIERLSKIPKIPDNGLALFCGEDMDTGDFICLMFVPPEKVPVYFYRTDKHFH
TEFLEEMVVESNLVGLIIIERDAATLGLLKGSRLEVLEEIEDYIPGKHHRGGQSQRRFDR
IIEQMVHDFYKRVGEHAKEKFLPLLEQGKLKAILIGGPAYSKYDFVEGDYLDYRLRQLVL
PRLIDVSYQGEVGLREMVMKASDLLKEQEYVDALKAVEEFKLNLAKDDGMIIYGEEDVKR
ALEMGAIKTLIIDEDRPDAHQWAELAKKYGAKPVFLSDDVPEGAWIKKTFGGLVGILRYR
IY
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
ttgtatgttgatagaagacagctccgagaaataattaaggaacttaagaaatggagtgct
ccagctactgttctcctaagtctatatattcctcccggtaggccggttagtgatgtatta
aatatgcttcgacaagaactctcaattactgataacataaaattaaagaagactagatca
gctgttcagagagcattgaaagccgctattgagagattaagtaagataccgaagatccct
gataatggattagcattattttgtggcgaagacatggatacaggagactttatatgctta
atgtttgttcccccagagaaagtacctgtttatttctataggacagataaacatttccat
acagaattcctagaagaaatggttgttgaaagcaatctagtaggccttataattattgaa
agagacgctgctactttggggttattgaaagggagcaggctagaagtgttagaggagata
gaggattatatacctggaaaacatcatagaggaggacagagtcagcgaagatttgataga
ataatagagcaaatggttcatgacttctataaacgtgtaggagaacatgctaaggaaaag
ttcttacctctacttgaacagggcaaattaaaagctatacttattggtggaccagcatat
agtaaatatgatttcgttgagggagactatctagattacagattgagacaacttgttcta
ccaagacttatagatgtaagttatcaaggagaagtgggtttaagagaaatggttatgaaa
gcctctgatctgttaaaggaacaagaatacgtggatgcgttaaaagctgtggaagaattt
aagctcaatctagcaaaagatgatggaatgataatatatggtgaagaagatgttaagaga
gcgcttgaaatgggcgctattaaaacattaattatagatgaagatagaccagatgctcat
caatgggctgagctagcaaagaaatatggtgctaaaccagtatttctaagtgatgatgtg
cctgaaggagcatggatcaagaaaacatttggaggactagtaggtattctaagatatcgt
atttattaa
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