Staphylothermus marinus: Smar_0634
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Entry
Smar_0634 CDS
T00485
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
smr
Staphylothermus marinus
Pathway
smr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smar_0634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0634
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Smar_0634
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Smar_0634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
EXOSC1
Zn_ribbon_RPB9
Prok-RING_1
Zn_Ribbon_1
DZR
Zn_ribbon_NUD
OB_RRP5_4th
RRP40_S1
Zn_ribbon_3
HypA
A2L_zn_ribbon
Zn_ribbon_NOB1
Cas12f1-like_TNB
Auto_anti-p27
RUBY_RBDX
RRP4_S1
2-oxogl_dehyd_N
DUF7129
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABN69740
UniProt:
A3DM80
LinkDB
All DBs
Position
648032..648598
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AA seq
188 aa
AA seq
DB search
MERIRQGVLVLPGDVIGVEEEYFPGQGVYVNGKGYLRSQLIGRVLIDIVKRTINVRNIHG
KPYVPKAGDIVEGIVSSVSEDLAFIDIYAIEEKPTRTTSFTGILHVSQASSEYIETMYDA
MRIGDIVRARVINSNHPFQLTTKEPRLGVIAAFCTKCGSLLRKQDDKLVCPICGNVEKRK
VSASYVFR
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggattaggcagggagtactggtgttgcctggagatgttataggtgtggaagaa
gaatattttccagggcaaggagtttatgtgaacggtaaaggatatctacgctcccaacta
attggtagagtattaatagatattgttaagagaacaataaatgttaggaatattcatggt
aaaccatatgttccaaaagcaggcgatatagttgaaggaatagtatcaagtgtatcagaa
gatctagcctttatcgatatatatgctatagaagaaaaacctacaagaacaactagtttt
acaggtattctccacgtatcacaagctagttcagaatatattgaaacaatgtatgatgca
atgagaataggcgatatagtcagagcacgagtaataaatagcaatcatccattccagtta
acaactaaggagccaagactaggagtgatcgcagctttctgtacaaaatgcggatcacta
ttgaggaaacaagatgataaactcgtatgtcctatatgtgggaatgttgagaaaagaaaa
gttagtgcatcatatgtttttcggtga
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