Staphylothermus marinus: Smar_0717
Help
Entry
Smar_0717 CDS
T00485
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smr
Staphylothermus marinus
Pathway
smr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Smar_0717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0717
03009 Ribosome biogenesis [BR:
smr03009
]
Smar_0717
04131 Membrane trafficking [BR:
smr04131
]
Smar_0717
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smr04147
]
Smar_0717
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Smar_0717
Ribosome biogenesis [BR:
smr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Smar_0717
Membrane trafficking [BR:
smr04131
]
SNARE
SNARE associated proteins
Others
Smar_0717
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Smar_0717
Exosome [BR:
smr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smar_0717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
TIP49
AAA_22
AAA_2
AAA_14
AAA_33
AAA_lid_PRS2_C
AAA_28
IstB_IS21
nSTAND3
RNA_helicase
AAA_24
Mg_chelatase
NPHP3_N
Sigma54_activat
AAA_18
Parvo_NS1
DUF815
ATPase
ATPase_2
Vps4_C
AAA_7
TsaE
AAA_25
AAA_3
PhoH
AAA_17
ABC_tran
NB-ARC
SLFN-g3_helicase
AAA_19
Zot
Motif
Other DBs
NCBI-ProteinID:
ABN69820
UniProt:
A3DMG0
LinkDB
All DBs
Position
723740..725956
Genome browser
AA seq
738 aa
AA seq
DB search
MSLSTPSNKSGKIKITLRVLESEPRDVGKGIARVDPAIMERYGIINGDILLVEGRKKTVV
RAVEGYEKDRGLGIIRLDKFSRQNAGVKIGDKVIVEKLDENEVQKAITVKLAPTKYYAPI
DPGTIGYIKNRLLNRPVLEEDLVVIQILGQTIPFKVILTKPKGPVIIKRNTNIIVLERPM
DHAVPRVTYEDIGGMKHIVQRVRELVELPLRHPELFRRLGIEPPKGILLYGPPGTGKTLL
AKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAIIFIDEIDAIAPKRD
EVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEVPLPDK
QGRLEILQIHTRGMPLANDVDLNKLAEITHGYTGADIAALVKEAALHALRRYMPEIDLES
ETIPVEVLEKMEVRMEDFLAAYKEIVPSGLREIYVEVPEVSWDDIGGLEDVKQELRRAVE
WPMKYPEVFKRLGIKPPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE
SEKAIREIFRKARLYAPAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLDN
VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNGRIEILKIHTRNMPLADDVDLYEIA
RLTEGYSGADLEALVREAAMRALKENIEINKVYMRHFLEAMNEVRPSITQDIVKLYEEWG
RKARQRLPREYLKPAMYT
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtcgacaccaagcaataaatccggtaagataaaaattacactaagagttctt
gaaagcgaaccaagagatgtaggtaagggaatagcaagagttgatccagcgattatggag
agatacggaataataaatggcgatattctacttgttgaaggaaggaagaaaaccgttgtt
agagctgttgagggatacgagaaagatcgtggattaggcattatcagactagacaaattc
tctaggcaaaacgcaggtgtaaagataggggataaagtaatagttgagaaattagatgag
aacgaagtccagaaagcaataacagttaaattagcccccacaaaatactatgcaccaata
gatccaggcacgattgggtatattaaaaatagactactaaaccgtcccgtattagaagaa
gacctagtagttattcaaatacttggacaaacaatacccttcaaagtaatcttgacaaaa
cctaagggaccagtcataataaagaggaacacaaacataatagtattagagagaccaatg
gatcacgcagttcctagagtaacatatgaagatattggaggcatgaaacacattgtacaa
cgagtaagagaactagtagagctaccgctaagacatccagagctgtttagaagactcgga
atagaaccacccaaggggatcctattatatggtcctccaggtactggtaagacattatta
gctaaagctgtcgctaacgaagcagaagcatatttcatagcaatcaacggacctgaaata
ataagtaagttctatggtgaatcagagcagaggcttagagaaatatttgagcaagcaaaa
aagaatgctccagcaataatattcatagacgaaatagacgctatagctcctaaaagagac
gaagtcatgggagaagttgaaaggagagttgtagcacagcttctagcattaatggacggg
cttgaaagccgtggagacgtaatagtaattgccgcaacaaataggcctaacgcattagac
ccagcactccgtagacctggaagatttgatagagaaatagaggttccactaccagataag
cagggaagactggaaattctacaaatacatacacgtggaatgcctttagcaaatgatgtt
gacctaaataaattagcagaaataacacatggatacacgggagcagacattgctgcacta
gtcaaagaagcagctttacacgcgcttagaagatatatgcctgaaatagatttggaaagt
gaaactatacctgtagaagtcctcgagaaaatggaggttagaatggaggatttcctagca
gcatataaggaaatagtgcctagtggtctacgtgaaatatatgttgaagtcccagaggtt
tcatgggacgatattggtgggttagaagatgttaaacaagagcttagaagagctgttgaa
tggcctatgaagtatccagaagtatttaagagacttggaataaaacctcccagaggaatc
ctattatatggtcctccaggtactggtaagacattattagctaaagctgttgctactgag
agtggtgcaaacttcatagcagtaagaggaccagaaatactaagcaaatgggtaggagaa
tcagaaaaagcgatcagggagatctttagaaaagcgagactctacgctccagcagtgatt
ttcttcgacgaaatagacgctatagctccagctagaggatatgctttcgattcaagagta
actgagagaatagttagccagttattaacggaaatggatggaatcaatagattggacaac
gtagtagttatagctgcaactaatagaccagacatactcgatccagcactgcttagaccg
ggaagatttgataagctaatatacgtgcctccaccagatctaaatggtagaatagagatc
ttaaagattcatacacgtaatatgccgttagctgatgacgtagacttatatgaaattgcc
agattaactgaaggatatagtggtgctgacttagaagcattagttagagaagccgctatg
agagcattaaaggagaacatagagattaacaaagtatatatgaggcatttcctagaagca
atgaatgaagtaagaccctcgatcacccaagacatagtgaagctatacgaggaatggggg
agaaaggcgaggcagagattaccaagagaatatttaaagcccgcaatgtatacataa
DBGET
integrated database retrieval system
