Staphylothermus marinus: Smar_0858
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Entry
Smar_0858 CDS
T00485
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
smr
Staphylothermus marinus
Pathway
smr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smar_0858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0858
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Smar_0858
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Smar_0858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
KH_1
RRP40_S1
RRP4_S1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABN69958
UniProt:
A3DMU8
LinkDB
All DBs
Position
843335..844057
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AA seq
240 aa
AA seq
DB search
MDIKILVADRQIVRPGDVLAIIENSGEVTPKYLPEKHIYIAGNRIYSDVLGIASITDKTV
SVIPLEGVYFPKKDDLVIGLITGVGITNWIVDIRAPYKAILNGSEVIEGFNPIIHNLRDY
LDIGEYIVAKIAVFDRTRDPVLTVKGKGLGKITEGTVIEVKPSRVPRIIGKKGSMLNLLT
SKTGCNIIVAQNGMVWARCPNNHRLNILIQALKIIEDKVHMRGLTEEIRLFLDKSLGGEG
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaaatactcgttgcagatcgacagatagtgaggcctggcgacgtactcgct
ataattgagaatagtggagaagttactcctaaatacctacccgaaaaacatatttatata
gcaggaaacaggatctactcagatgttctcggaatagcgtcaataacggataagactgtt
tcagtaattccacttgaaggtgtttactttcctaaaaaagacgatttagtaataggactt
attaccggggtaggtataacaaattggatagtagatatacgagcaccatataaagccata
cttaacggttcagaagttattgagggattcaatccaatcatacataatcttagagattac
ctggatataggcgaatatattgtggcaaaaatagctgtgtttgataggacaagagatccc
gtcttaacagttaaaggtaaaggtctaggcaaaatcactgaggggacagtgatagaggtt
aaaccaagccgtgtcccaagaataataggtaagaaaggaagtatgctgaatctattaaca
agtaagactggatgcaatattattgttgcacaaaacggtatggtatgggctagatgccca
aataatcatcgcttaaatattcttatccaagccctaaaaatcatagaggataaagttcat
atgcgtggattaaccgaggaaataaggcttttcctagataaatctcttggaggagaggga
tga
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