Staphylothermus marinus: Smar_0987
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Entry
Smar_0987 CDS
T00485
Name
(GenBank) tRNA intron endonuclease, catalytic-like protein
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
smr
Staphylothermus marinus
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smr03016
]
Smar_0987
Enzymes [BR:
smr01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Smar_0987
Transfer RNA biogenesis [BR:
smr03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Smar_0987
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
Motif
Other DBs
NCBI-ProteinID:
ABN70086
UniProt:
A3DN76
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All DBs
Position
complement(966463..966984)
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AA seq
173 aa
AA seq
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MKYSYIVWFDQSKCIGIVKDKKSINNLEKKWFGRLEGENLVLDIVELAYLLLHGRIRLVL
EGLEITTYNEFLEKNYGCLKQFFWPKLVVYKDLRDRGRKVRVIDDKKFLVKDKHGDLKLV
VILEEGSKRPADTIIKDIETAHSNNLELIYAIVSLQGDLTYYEVSKIDPRNEQ
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatagctatatagtatggtttgatcaatctaaatgtataggtatagttaaagac
aaaaagagcattaataatttggagaaaaaatggtttggtagactagaaggagaaaactta
gttttagatattgttgagctagcatacctacttctacatggtagaatacgcctagttcta
gaaggactagaaataaccacatataacgagtttttagagaaaaactatggttgtctaaaa
cagttcttttggccaaagctagttgtatataaggatcttagggatcgggggagaaaagta
agagttatagatgataagaagtttctggttaaagataaacatggtgatttaaaactagtt
gttatattagaggaaggctcaaaaagaccagcagatactattattaaagatattgaaaca
gcacatagtaataacttagaactcatttatgctattgttagtttacagggagacttaaca
tattatgaagtttcaaaaatagatccgaggaatgagcagtga
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