Staphylothermus marinus: Smar_1123
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Entry
Smar_1123 CDS
T00485
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smr
Staphylothermus marinus
Pathway
smr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Smar_1123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_1123
03009 Ribosome biogenesis [BR:
smr03009
]
Smar_1123
04131 Membrane trafficking [BR:
smr04131
]
Smar_1123
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smr04147
]
Smar_1123
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Smar_1123
Ribosome biogenesis [BR:
smr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Smar_1123
Membrane trafficking [BR:
smr04131
]
SNARE
SNARE associated proteins
Others
Smar_1123
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Smar_1123
Exosome [BR:
smr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smar_1123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
TIP49
AAA_5
AAA_2
AAA_33
AAA_22
Vps4_C
AAA_14
AAA_28
RNA_helicase
AAA_18
IstB_IS21
AAA_lid_PRS2_C
nSTAND3
Mg_chelatase
AAA_25
NPHP3_N
Parvo_NS1
AAA_24
TsaE
ABC_tran
AAA_3
ATPase_2
DUF815
ATPase
AAA_7
AAA_17
Zeta_toxin
PhoH
Molydop_binding
bpMoxR
NACHT
SLFN-g3_helicase
Bac_DnaA
DUF5906
AAA_6
Motif
Other DBs
NCBI-ProteinID:
ABN70219
UniProt:
A3DNK9
LinkDB
All DBs
Position
1083878..1086079
Genome browser
AA seq
733 aa
AA seq
DB search
MPRNNNREIRLRVAEARQRDVGRKIVRISRTDMARIGVVTGDFVEIIGPRGSIIAQVWPA
YPEDEGKDIIRMDGYLRRAIGASVGDIVSVKKTSVEPATKVVLAPTEPIRFGPDFVEYVR
QFLIRKPLSRGEEIEIPIFGMSLKFVVIATQPGYRVYVTDETEIQIRSEPVKEEVIERAR
MIPKVTWEDIGDLEEAKQKIREIVELPLKHPELFKHLGIEPPKGILLYGPPGTGKTLLAK
ALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERNAPAIIFIDEIDSIAPKREEV
TGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPDALDPALRRPGRFDREIEIPPPDKRA
RREILAVHTRNMPLEEDVDLDKIAEMTHGYTGADLAALVKEAAMAALRRFIKEGKIDLTQ
PIPAEKLRDLKVKMSDFLEAMKYVQPTLIREIYVEVPEVRWSDIGGLEDVKQQLREAVEW
PMKHPEVFEQMGIEPPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGES
EKAIRQIFRRARQVAPAVVFFDEIDSIAPARGYRHDTSGVTDRIVNQLLTELDGIEPLRK
VVVIAATNRPDILDPALLRPGRFDRLIYVPPPDFKARIEIFKVHTKKMPLAPDVDLEELA
RRTEGYTGADIAAVCREAAILALREEFKVRPVEMKHFLEALKHVPPSLTRTDMERYERMA
KELKRMGGLPYRV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcctagaaataataatagagagataagacttagagtagcagaagcaagacaaagagat
gttgggagaaagattgtcaggatcagtagaacagatatggccaggataggagttgttaca
ggagatttcgtggaaatcattggtcctcgaggaagcattattgcgcaggtttggccggct
tatcctgaagatgaaggtaaagacataatacgtatggatggatatttacgtagagctatt
ggagctagtgttggagacatagttagtgttaagaaaacaagtgttgagccggcaactaaa
gtagttctagcaccaacagaacctatacgtttcggtccagatttcgttgaatatgttcgt
caattcttaattagaaaaccacttagcagaggtgaggaaatagaaatcccgatatttggt
atgagcctaaaatttgtcgttatagcaacacagcctggatacagagtatatgtgactgat
gaaacagagatacagatacgtagcgaacctgttaaggaggaagttattgaaagagctagg
atgatacctaaagtaacttgggaagacataggtgatcttgaggaagctaagcaaaagata
agggaaatagttgaattaccattaaaacatcccgaactattcaaacatttaggtatagag
cctccaaagggtatcttactgtatggtccaccaggtactggtaagacattattagctaaa
gccttagctaacgagattggagcatactttacagcgataaatggtcctgagataatgagt
aagttctatggtgaatcagagcagaggcttagagaaatatttgaagaagctgagagaaac
gctccagcaataatattcatagatgaaatagacagtattgctcctaagagggaagaagtt
actggcgaagtggaaaaaagagttgtagcacaacttctagcattaatggatggtttgaaa
gaacgtggaaaagtaatagtgattggagcaactaatagacctgacgcattagacccagca
ctccgtagacccggaagatttgatagagaaatagagattccaccaccagataagcgtgct
agaagagaaatacttgctgttcacacacgtaacatgcccttagaggaagatgttgatcta
gataagattgctgaaatgactcatggatatacaggagcagatttagctgcactagttaaa
gaagcagcaatggctgcactaagaagattcattaaagaaggcaaaatagatctaacacaa
cctattccagcagagaaactaagagatctgaaagttaaaatgtctgacttccttgaagca
atgaaatatgtgcaaccaacacttatcagggaaatatatgttgaagtcccagaggttaga
tggagcgatattggaggccttgaagatgtgaagcaacagttaagagaagctgttgagtgg
cctatgaagcatcccgaagtatttgaacaaatgggtattgagccgcctaagggaatacta
ttgtttggaccgccaggtactggtaagacattattagctaaagctgttgccactgagagt
ggtgcaaacttcatagcagtaagaggaccagaaatactaagcaaatgggtaggagaatca
gaaaaagcaattagacaaatatttaggagagcaagacaagttgctcccgccgttgtgttc
tttgatgaaatagattcgatcgcgcctgcccgtggttataggcatgatacaagtggagtc
acagatcgtattgtgaatcaattattaacagagcttgatggaatagagcctcttagaaaa
gtagtagttatagctgcaactaatagaccagacattctcgatccagcactgcttagaccg
ggaagatttgatagattaatatatgtgccaccaccagactttaaagcgagaatagaaata
ttcaaagtacacacgaagaaaatgcctctggcacccgatgtagacttagaagaactagct
agaagaactgaaggctatactggggcagatatagctgcggtttgtagagaagcagcaata
cttgctttaagagaggaattcaaagtaagacctgttgaaatgaagcacttcttagaagca
ttgaaacacgtacctccaagcctgacaagaactgatatggaaagatatgagagaatggct
aaagaactcaagagaatgggcggactaccatatagggtctag
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