Candidatus Karelsulcia muelleri SMDSEM: SMDSEM_012
Help
Entry
SMDSEM_012 CDS
T00958
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sms
Candidatus Karelsulcia muelleri SMDSEM
Pathway
sms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDSEM_012 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sms03021
]
SMDSEM_012 (rho)
03019 Messenger RNA biogenesis [BR:
sms03019
]
SMDSEM_012 (rho)
Transcription machinery [BR:
sms03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMDSEM_012 (rho)
Messenger RNA biogenesis [BR:
sms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMDSEM_012 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA
AAA_22
AAA_14
NACHT
ATPase_2
AAA_24
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ACU52745
UniProt:
C7LJY3
LinkDB
All DBs
Position
complement(16610..17749)
Genome browser
AA seq
379 aa
AA seq
DB search
MTDKYGFLRSSYTNYLSSSKDVYVSQSQIRLFRIKTGDTIRGEVRTPNPKKGEKYFPLKR
IFQINGRFPTSVIKRKSFKKLTPLFPNEKFQISKRKVTLSTRIVDFFSPLGKGQRGIIVA
PPKTGKTTLLKEIANTIAYNHPEVYLIILLIDERPEEVTDMQRNVNGEVVYSTFDEPAEK
HVKVANIVLQKAKRMVECGHDVVILLDSITRLARAYNTVSPTSGKILSGGVDSNALQKPK
RFFGAARNIEYGGSLSIIATAIIETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIFPAI
DLNASSTRKEEFLLTKYNLNKMFLIRKLLAEMTSVEAIDFIKTRLMKTKNNQEFFKSIKS
SIKSSIKSSRDRENIEKKI
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaagtatggctttttaagatcttcttatactaattatttatcctcatctaag
gatgtttacgtttcacaatctcaaataagactttttagaattaaaacaggtgatactatc
agaggagaagtacgaactccaaatccaaaaaaaggagaaaaatattttcctttgaaaaga
atatttcaaataaatggacgatttcctacttctgtaataaaaagaaaatcttttaaaaag
ttaactccattatttccaaatgaaaaatttcaaatttcaaaaagaaaagtaactctttct
acaagaattgtagatttcttttctcctttaggaaaggggcaaagaggaattatagtagca
cctcctaaaactgggaaaacgactttattaaaagaaatagccaatacaattgcttataat
catccagaagtatatttaataattcttttaatagatgaaagaccagaagaagtaacagat
atgcaaagaaatgttaatggcgaagtagtatactctacttttgatgaaccagcagaaaaa
catgtaaaagtagctaatattgttttacaaaaagcaaaaagaatggttgaatgtggacat
gatgtagtaattttattagattctataacacgattagcacgagcatataatacggtatct
cctacatctggaaaaattttatcaggaggtgtagattctaatgctttgcaaaaacctaaa
agattctttggtgcagctagaaatattgaatatggaggttctctttctataattgctact
gcaataatagaaacgggctccaaaatggatgaagtaatttttgaagaatttaaaggaaca
ggaaatatggaattacaattagatagaaaaattgcgaataaaagaatttttccagctata
gatttgaatgcttctagtacaagaaaagaagaatttttattaactaaatacaatttaaat
aaaatgtttcttataagaaaacttctggctgaaatgacgtctgtcgaggcaattgatttt
atcaaaacacgtttaatgaaaacaaaaaataatcaagaattttttaaatctattaaatcg
agtattaaatcgagtattaaatcgagtcgagatcgagaaaatatagaaaaaaaaatttaa
DBGET
integrated database retrieval system
