Candidatus Karelsulcia muelleri SMDSEM: SMDSEM_060
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Entry
SMDSEM_060 CDS
T00958
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sms
Candidatus Karelsulcia muelleri SMDSEM
Pathway
sms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMDSEM_060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sms03021
]
SMDSEM_060 (rpoC)
03400 DNA repair and recombination proteins [BR:
sms03400
]
SMDSEM_060 (rpoC)
Enzymes [BR:
sms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMDSEM_060 (rpoC)
Transcription machinery [BR:
sms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMDSEM_060 (rpoC)
DNA repair and recombination proteins [BR:
sms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMDSEM_060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ParM_N
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ACU52788
UniProt:
C7LK26
LinkDB
All DBs
Position
complement(63693..68045)
Genome browser
AA seq
1450 aa
AA seq
DB search
MKENIKNKILNRKNKILNRKNKILNRNEEKEINYFNKITISLAYSADILKTSYGEVLKPE
TINYRTHKPEKDGLFCERIFGPIKDFECTCGKFKKFRYKGFICKKCGVEIIETKVRRERM
GHINLVVPIVHIWGFRSLPNKIGYILDLSSQQLEMIIYYERYVVLQQGVRRKKNFPFKKL
ELLTEEEYLKVIKSLPKGNKNLSDDDPKKFIAKMGGEGLEYLLKNIDFKLLRSYLKKKIK
RTYQKKIEDLKRLNVIEGVLEGKKKGGKIESLMLRTLPVIPPELRPLVPLGGGRFATSDL
NDLYRKIIIRNNRLKKLIAMKAPDIILRNEKRMLQEAVDSLFDNSKQITTVKSETNRPLK
SLSDGLKGKQGRFRLNLLGKRVDYSARSVIVVGPQLKLHECGLPKEIAAEIYKPFIIKIL
IDRRIVKTVKSAKKFIDQKHPMLWDVLEYLLKGHPVLLNRAPTLHRLGIQSFQPKLIDGK
AIQLHPLVCSAFNADFDGDQMAVHLPLSTEAILEAKLLMLASQNLLNPSNGDPITVPSQD
MILGLYYLTKKLKSTKTNKIKGEGMCFSSFEEVEIAFQNKIVNIHAIIRVKAKILDYKDW
LLKTKFITTTVGRVLFNKIVPNKAGFINQLLTKKSLKEIISNILNITNIPTTAKFLDALK
ELGYYHAFKGGLSFNINDILIPKEKKIFVKKAMKKLEIIKNHYNMGLITNNERYNQIIDI
WTNTNNKLTEKVINYMKTSKQGFNSVYMMLDSGARSSREQIRQLAGMRGLMAKPKKYSSS
LEGEGEGEGESESEAEGAGSEIIENPILSNFLEGLSILEYFISTHGARKGLADTALKTAD
AGYLTRRLVDSAQDVIIQENDCKTLLGIKVSALKKNDEIIETLSNRVLGRISLKEISHPR
TNKLLIKSSEMIDEKNVFLLEEAELDSLEVRSPITCESEIGICRKCYGRNLANRSLIKKG
EAVGVMAAQSIGEPGTQLTLRTFHVGGTAGKIYESSKIKAKYDGYIEYENIKIVKNKYET
IVVSRFAEMKLFNSRGLLLMKQRIPYGSTLYVLNKTFLKKNETICSWDPYNAVIIAEISG
HIKYENLEKGINFQSEIDSQTGFKEQVITEVTNQIPRLKIVNKKNEVLKTYNLTVGTHLV
VKNGEKITEGTILLKIPRKSFQSRDITGGLPQLSELFEARYTFHPAMVAEINGIVSYGKF
KKGKKEIILFSKSGKKKKYLLKFNQQVMVQEYDYIKAGKPLSDGDLSIRKILYIKGLKAA
QQYLVNAIQEIYRLQGVKINEKHFEIIVKQMMRKVKIIKSGDSPFLEGNIESKEDFLEVN
RKIIKMKFIENSGDSKKFYEGQLRNFFDIKKENKILNGLNKKLISYREALPALSIPIIQG
ITKSALHTKSFLSAASFQETTKVLIDAAISQTTDYLNGLKENVIVGKKIPAGTGFTEYSE
EEIFIGDKNI
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaacataaaaaacaaaattctgaacagaaaaaacaaaattctgaacagaaaa
aacaaaattctgaacagaaacgaagagaaagagattaattattttaataaaattactatt
agtttagcttattctgcagatatattaaaaacttcatatggggaagtattaaaaccagaa
acaataaattatcggactcataaacctgaaaaagatggtcttttttgtgaacggattttt
ggacctattaaagattttgaatgtacttgtggaaaatttaaaaaatttcgttataaagga
tttatatgcaagaaatgtggtgtagaaataattgagacaaaagttcgtcgtgaaagaatg
gggcatattaatttagtagtaccaatagtccatatttgggggtttagatctcttccaaat
aaaattggatatattttagacttatcatctcaacaacttgaaatgataatttattatgaa
cggtatgttgttcttcaacaaggtgttcgaagaaagaaaaattttccttttaaaaaatta
gaattattaactgaagaagaatatttaaaagttataaaatctcttccaaaaggaaataaa
aatttatctgatgatgatcctaaaaaatttattgctaaaatgggtggtgaaggtttagaa
tatttactcaaaaatattgatttcaaacttttgagatcttatttaaaaaaaaaaattaaa
agaacttaccaaaaaaaaattgaggatttaaaaagactaaatgtaatagaaggtgtttta
gaaggaaaaaaaaaaggaggaaaaattgaatctctaatgttaagaacacttcctgtaatt
cctccagaattacgtcctttagttcctttaggagggggcaggtttgcaacttcggattta
aatgatctttatagaaaaataataattagaaataatagattaaaaaaattaatagcaatg
aaagctcctgatataatattacggaatgaaaaaagaatgttacaagaagcagtggattct
ctttttgataattcaaaacaaattacaacagtaaaatcagaaactaatagaccattaaaa
tctttatctgatgggttaaaaggcaaacaaggtcgttttagactaaatcttttaggaaaa
agagtagattattcagcaagatcagtaatagtagtaggtccccaattaaaattacatgaa
tgtggattacctaaagaaatagcagctgaaatttataaaccttttattattaaaattctt
attgacagaagaattgtaaaaacagtaaaatcagctaaaaaatttatagatcaaaagcat
cccatgctatgggatgtattagaatatcttttaaaaggtcatccagttcttttaaataga
gctccaactcttcatcgattaggaattcaatcatttcaacctaaattaattgatggcaag
gctattcaattacatccattagtttgttcagcctttaatgctgattttgatggagatcaa
atggcagttcatttaccattatcaactgaagctattttagaagctaaattattaatgtta
gcatcacaaaatcttttaaatccttctaatggagacccaattacagttccatcacaagat
atgattttaggattatattatttaacaaaaaaattaaaatctactaaaacaaataaaatt
aaaggggaaggaatgtgtttttcttcttttgaagaagttgaaatagcttttcagaataaa
attgtaaatattcatgctattattagagtaaaagctaaaattttagattataaggattgg
ttattaaaaacaaaatttataacaactacagtaggaagagttttatttaataaaattgtt
cctaacaaagcaggatttataaatcaattattaacaaaaaaatctttaaaagaaattata
tctaatatattaaatattaccaatattcctactactgcaaaatttttagatgctctaaaa
gaattaggatattatcatgcttttaaaggaggtttatcttttaatataaatgatatactt
attccgaaagaaaaaaaaatttttgttaaaaaagcaatgaaaaaacttgaaattattaaa
aatcattacaatatgggattaataactaataatgaacgttataatcaaataatagatata
tggactaatactaataataaattaacagaaaaagttattaattatatgaaaacaagtaaa
caaggatttaattctgtatatatgatgcttgattctggagctagaagttcaagagaacaa
atacgtcaattagccggaatgagaggactcatggctaaacctaaaaaatatagttctagt
ttagagggtgagggtgagggtgagggtgagagtgagagtgaggctgaaggggcaggttca
gaaattatagaaaatccaattttatctaattttttagaaggattatctatattagaatat
tttatatctacacatggagcaagaaaaggactagctgatacagctttaaaaactgcagat
gctggatatttaacaagacgtttagtagattcagcacaagatgtaattatacaagaaaat
gattgtaaaaccttattaggaataaaagtatctgcattaaaaaaaaatgatgaaataata
gaaacattgtcaaatagggttttagggagaatatctttaaaagagatttctcatcctagg
actaataaattgttaataaaatcatctgaaatgatagatgaaaaaaatgtttttctttta
gaagaagcagaactagatagtcttgaagtaagatctcctattacatgtgagtctgaaata
ggaatttgtagaaaatgttatggaagaaatcttgctaaccggtctctaattaagaaagga
gaagccgtaggagtgatggcagcacaatcaattggggaacctggcactcaactgactctt
agaactttccatgttggaggaacagctggcaaaatatatgaatcttcaaaaataaaagca
aaatatgatggatatatagaatatgaaaatataaaaatagtaaaaaataaatatgaaact
attgtagtttctagatttgctgaaatgaaactattcaatagtaggggattacttttaatg
aaacaaaggattccatatggatcaactttatatgttttaaataaaacatttttaaaaaaa
aatgaaactatatgtagttgggatccatataacgcagttattatagctgaaatttcagga
catataaaatatgaaaatcttgaaaaaggaattaattttcaaagtgaaattgactctcaa
actggatttaaagaacaagtaattacagaagtaacaaatcaaattcctagactaaaaata
gtcaataaaaaaaatgaagttttaaaaacttacaacctcactgtaggaacacatttagta
gtaaagaatggagaaaaaattacggaaggaactattttattaaaaatacctagaaaatct
tttcaatcaagagatataacaggagggttacctcaattatcagaattatttgaagcaaga
tatactttccatcctgcaatggtagccgaaataaatgggattgttagttatggaaagttt
aaaaaaggaaagaaagaaataattttattttctaaatcaggaaagaaaaaaaaatatttg
ttaaaatttaatcaacaagttatggttcaagaatatgattatataaaagcaggaaaacca
ttatcagatggggatctttcaataagaaaaattttatatattaaaggtttgaaagctgct
caacaatatttagttaatgctatacaagaaatatatcgtttacaaggtgtaaaaattaat
gagaaacattttgaaattatagtaaaacaaatgatgagaaaagtaaaaattataaaatca
ggagattctccttttttagaaggaaatattgaatctaaagaagattttttagaagtaaat
agaaaaataattaaaatgaaatttattgaaaattcaggtgattctaaaaaattttatgag
ggtcaattaagaaatttttttgatattaaaaaagaaaataaaattttaaatggtttaaat
aaaaaactcatctcttatagagaggccctgccggctttatctatacctattattcaagga
ataactaaatcagcgttacatacgaaatcttttctttcggctgcttcttttcaagaaact
acaaaagttttaattgacgctgctattagtcagacaactgattatttaaatggattaaaa
gaaaatgttattgtaggtaaaaaaattccagcaggaactggatttacagaatattcagag
gaagaaattttcattggagataaaaatatttaa
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