Stenotrophomonas maltophilia R551-3: Smal_0954
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Entry
Smal_0954 CDS
T00733
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt02020
Two-component system
smt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Smal_0954
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Smal_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smt03021
]
Smal_0954
Transcription machinery [BR:
smt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Smal_0954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
Sigma70_r4
MarR_2
HTH_38
Sigma70_r4_2
HTH_Crp_2
HTH_24
HTH_29
HTH_AsnC-type
HTH_28
HTH_11
HTH_17
AbiEi_4
HTH_Tnp_ISL3
TetR_N
HTH_5
MarR
HTH_20
HisKA
Motif
Other DBs
NCBI-ProteinID:
ACF50659
UniProt:
B4SMI2
LinkDB
All DBs
Position
complement(1098250..1099674)
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AA seq
474 aa
AA seq
DB search
MKTRLQTSLGQQLVLTPQLQQAIKLLQMSSTELELEIAQAVESNPLLDWADSSDSSSAAN
ETSDNPDGDAAAERADNGDDWAPAELDWSAAGSGGSFDDDDDTGSAAERVAETETLADHL
LWQLHLSHLTARDRSIGAALIDALDDDGYLREPLAGIAETLLPAIHADQDEILAVLHRIQ
RFDPVGAAARTLGECLQLQLEVLDDTTPGLALARQIAAGPLERLPRSGVAGLAHELKLPL
AEVETAVTLLRSLDPRPGTQIAPLSQDTYVVPDVVVWRQNGVWRAALAAHAGPRVVIHRG
YEQLIRRCGEADAGYLRAQLQEARWLLKGLQQRGETLLRVVRSLILQQAGFLEFGEQALR
PLTLREIAAELGLHESTVSRAIARKHVRTPRGTLPLRAFFASGIDTEGGGEASSTAIQAM
IRRLIDDENPRKPLSDAKLADLLKSSGIPVARRTVAKYREAMNISASHERVRIA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcggctgcagacatcgttgggacagcagctggtgctcacgccccagctgcaa
caggcgatcaagctgctgcagatgtccagcaccgagctggaactggaaatcgcgcaggca
gtggaaagcaatccactgctggactgggccgacagcagcgacagcagcagcgccgccaac
gaaaccagtgacaaccccgacggcgatgcagcggccgaacgtgccgacaacggcgacgac
tgggcgccggccgaactggactggagcgcggccggcagcggcggcagcttcgacgatgac
gacgataccggcagtgccgccgaacgcgtggccgaaaccgaaaccctggccgatcatctg
ctgtggcagctgcacctgtcgcacctgaccgcacgtgatcgcagcatcggtgccgcactg
atcgatgcactggacgacgatggctacctgcgcgaaccgctggcaggcatcgccgaaacc
ctgctgccggccatccatgccgaccaggacgagattcttgccgtgctgcaccggatccag
cgtttcgatccggtcggcgcggccgcgcgcaccctcggcgaatgcctgcagctgcagctg
gaggtgctggacgacaccacaccgggcctggcattggcgcgacagattgccgcgggcccg
ctggaacggttgccgcgcagcggcgtggccgggctggcccacgagttgaaactgccgctg
gccgaggtcgagactgcagtgaccctgctgcgttcgctggatcctcggccgggcacgcag
atcgcccccctgtcgcaggacacctacgtggtacccgatgtcgtggtgtggcggcagaac
ggcgtgtggcgcgctgcactggccgcgcatgccgggccaagggtggtgatccaccgcggc
tacgaacagctgatccgccgctgtggcgaggccgatgccggctacctgcgtgcacagctg
caggaagcgcgctggctgctgaaagggctgcagcagcgtggcgaaaccctgctgcgcgtc
gtgcgcagcctgatcctgcaacaggctggcttccttgaattcggcgaacaggcgctgcgc
cctctgacactgcgcgagatcgccgccgagctcggcctgcacgaatcgacggtgtcgcgc
gcgattgcccgcaagcacgtgcgtacgccacgcggcaccctgcccctgcgcgccttcttc
gcctccggcatcgacaccgaaggcggcggcgaggcctccagcacggccatccaggcgatg
atccgacgcctgatcgacgacgagaacccacgcaagccgctttctgacgccaagctggct
gacctgctcaaatcgtcgggaattccagtagcgcggcgcaccgtggcgaagtatcgtgaa
gccatgaacatctccgcctcgcacgaaagggtcagaatcgcttga
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integrated database retrieval system
