Stenotrophomonas maltophilia R551-3: Smal_1225
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Entry
Smal_1225 CDS
T00733
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smal_1225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smt03019
]
Smal_1225
03009 Ribosome biogenesis [BR:
smt03009
]
Smal_1225
Enzymes [BR:
smt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Smal_1225
Messenger RNA biogenesis [BR:
smt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Smal_1225
Ribosome biogenesis [BR:
smt03009
]
Prokaryotic type
rRNA helicases
Smal_1225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACF50930
UniProt:
B4SPP3
LinkDB
All DBs
Position
1391122..1393062
Genome browser
AA seq
646 aa
AA seq
DB search
MSQESQAQLQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PAKRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQNVP
AIEVAAALAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPR
RDDAEGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIG
RIDIHDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPRFDKR
GPGGPGGPRRSGPGGPGGDRGGDRGGDRDSRPPRRDGFKPRGPRSY
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatcccaagcgcagctgcagttcgcgcagctcggcctgtccgagtctgtc
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggctgccaccatt
ccggcgatgctggaaggccgtgacgtgctgggccaggcccagaccggtaccggcaagacc
gccgcctttgcgctgccggtactgtccaacatcgacctgcagcagatcaagccgcaggcg
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggcgttccagtcctat
tcctcgaagatccccggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggcgctgcgtcgcggcgtgcacatcgtggtcggtacccccggccgcgtcatc
gaccacctggatcgcagcacgctggacctgtccgagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggccaagcgccaggtcgccctgttctcggccacgatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcattttcgcgcgcaccaaggccggt
accgaggaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcgcagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggat
atcctggtcgccaccgacgtggctgcccgcggcctggacgtggaacgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtactggc
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgtgctacccgccagccgatcgaagaaatgcagctgccgagcgtggaa
gcggtcaacgacaaccgcatcaacaagttcacctcgcgcatcaccgagaccctcggccag
ggcggcctggacttctaccgccagctgttggaacgcttcgagaccgagcagaacgtgccg
gccatcgaagtggctgctgcgctggcgaagatgatgcagggcgataccccgttcctgctg
cagccgccggtgcgtgcaccgcgcgaagaacgtgcgccgcgtgagcgtttcgagcgcact
gagcgcccggaacgtggcgatcgcaacgagcgtggtccgcgcttcgagcgtggcccgcgt
cgtgacgatgccgagggtggcttcgagcagcgcccgcgccgtgatgtgccgccgcgcggt
gcaccggagcagggcatggagacctaccgcatttcggtcggccaccagcacggcgtgaag
ccggccaacatcgtcggcgccatcgccaacgaggccggcctggaaagccgtttcatcggc
cgcatcgacattcacgatgacttctcgctgctggacctgccggcgcagatgccgtcggac
gtgctgacccacctgcagaaggtgtgggtctccggccagcagctgcagatgcgtccgctg
gcggctggtgaagagatcaacccggcgccgcgtccgttcaagccgcgcttcgacaagcgt
ggtccgggtggtccgggtggcccgcgccgcagtggcccgggtggccctggtggcgaccgc
ggtggtgaccgcggtggtgaccgcgacagccgcccgccgcgtcgtgacggcttcaagccg
cgcggcccgcgcagctactaa
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