Stenotrophomonas maltophilia R551-3: Smal_2600
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Entry
Smal_2600 CDS
T00733
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Smal_2600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smt03400
]
Smal_2600
Enzymes [BR:
smt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Smal_2600
DNA repair and recombination proteins [BR:
smt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Smal_2600
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Smal_2600
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Smal_2600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACF52300
UniProt:
B4SPA5
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All DBs
Position
2898930..2900369
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AA seq
479 aa
AA seq
DB search
MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV
TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER
EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD
VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV
LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK
VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVADVDA
SLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQ
RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSLRDWGQHLQETL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcttcctgttctacgacctggaaaccttcggccaggacccgcggcgcacg
cgcatctcgcagtacgccgcgattcgtactgacgccgacctcaacgaaatagacacgccg
gtcagctttttcgtgcgcccggccgatgatctgctgccctcgccgatggccacgctggtg
accggtattactccgcagcaggcactggccgaaggcatcagcgaagccgaagccttcgac
cgcatcaacgagcagctgtcgcggccgggcacctgcgcgctgggctacaacaccctgcgc
ttcgacgatgagttcgtccgctacggcctgttccgcaatttccacgacccgtacgaacgc
gagtggcgcaacggcaattcacgctgggacctgctggacatgctgcggctgatgcgcgcc
atgcgcccggagggtatccagtggccgctgcgcgaggatggcgccacctcgttcaagctc
gaacacctggccgaagccaacaacgtgcgcgaaggcgatgcgcacgaagcgctgtccgac
gtgcgcgccaccatcggcatggcgcggctgttcaagcagtcgcagccacgcctgtgggac
tacgccctgaagctgcgcgacaagcgcttcgtcggcagcctgctggacgtggccgcgatg
aagccggtactgcacatttccatgcgctacccggccagccgcctgtgcgcggcaccggtg
ctgccgctgtcgatgcatcccaccgtcaacaaccgggtaatcgtgttcgacctggacggt
gacatcgacgacctgctggaacttccggccgaggtgatcgcgcagcgcctgtacatgcgt
gccagcgaactgcccgagggcgcgacgcgggtgccgctgaaggaagtacaactgaacaag
gtgccggcgctgatcgcctggaaccacctgcgtgccgatgaccatgcgcgtctcggcctg
gacgtggccgcgatcgaggccaaggccgagcgcctgcgtgcgttcgccccacagctggcc
gagaaggcacgacaggtctacaaccagccgcgcgtggccaatgtggccgacgtcgatgcc
tcgctgtacgacggcttcctgggtgccggcgacaagccactgctggcactggcgcgcacc
accgcgccggagcagctggccgcgctcgaaggccgtttccgcgacccgcggctgccggag
ctgctgttccgctaccgtgcgcgcaaccatcccgacagcctcgcaccggatgaacgccag
cgctggcaggattaccgccgccagcgcctgctcggagacggcggcctgggcgaactcaac
ctgccccagtaccagcagcagctggatgcactggctgccgaagcgcccgatgacgcgcgg
cgccaggatctgctgcagtcactgcgcgactggggccagcacctgcaggagaccctgtga
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