Stenotrophomonas maltophilia R551-3: Smal_3101
Help
Entry
Smal_3101 CDS
T00733
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smt03019
]
Smal_3101
Enzymes [BR:
smt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Smal_3101
Messenger RNA biogenesis [BR:
smt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Smal_3101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
WHD_HA2
HA2_C
AAA_19
AAA_22
SRP54
AAA_30
nSTAND3
NACHT
AAA_25
ResIII
T2SSE
Cas3-like_C_2
nSTAND_NTPase5
SLFN-g3_helicase
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ACF52800
UniProt:
B4ST09
LinkDB
All DBs
Position
complement(3468344..3472426)
Genome browser
AA seq
1360 aa
AA seq
DB search
MNAIDKMPQSRQRQQRAAIDGAMSRDRGRLLGMLSRCQAKPQDAALAATFEQALQVSVQR
RQARAQQQPSITLDPQLPIAREADAIIGLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
QAGMIGCTQPRRIAARAVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILLA
EIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQH
FDNAPVISVEGRTYPVEVRYRALEGEGEQEGERTVNDAIVSAIDEITRLDSRGDVLIFLP
GEREIRDAHQSLERRKYRNTEVLPLYARLSNQDQDRVFNPGPNRRIVLATNVAETSLTVP
RIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRVAEGICYRLYAEADFQ
ARSEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQHLTELGAIDSE
RHLTAIGKQMSRLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPRERPPEARGAADS
AHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRMREWRELHRQLRL
LCEELGWKEEANEASMAPLLAGSSAPAAARDDAAAVKATRGQLHRAARLAREGKAEAAPA
PVAVRAQKEQAPVGGGFSERVRATAYQTLHRALVAGLPTQIGHRTEKGDFQAPRQRRFLP
FPGSTLSKRPPPWLLVANLLDTQKVWGMTLAAIEPDWVIAELPHLLLRKHFDPHWSRAQG
QVLASEQISLFGLVLAPKKPVHYGRINPGEAHDIFVRQALVTGEITTRASFVADNQKVLE
IAREEEAKLRRAGIVADEDWQARWYLDRVPPQIHSAAGLDTWWKGLAPEQRKPLHWSLVD
LLPGEGSEQERYPKYLALGQARLPLHYRFEPGADDDGVTLEVPLHLLNALDAVQLGWLAP
GFVADKAAALIRSLPKAMRRNYVPAPDFARAFFEAFPQPGADAITGELARFLSRATGAKV
AATDFEPDSIEAHLHMNLRLRDENGKVLATSRDLDALRATFGGRAGDAFAARAGREMAAD
GLRTFPATPIPLQVPGEAGVPAYPALLDEGDSVALRIFADRQQAEEAHPLGVRRLLEIGL
GEKIKQARKQLPVAAKTGLLYASIETQERLRGDLVDAALNAVLADGLGEIRDAQAFEQRR
EQAAKALFGEAMQRLKLAEAILALVAELKPMLEAPLMGWARGNLDDMEAQLVGLIHPGFL
RDTPADALAQYPRYLKAMILRTERAKRDPPRDQARMLELHPFLEALQAGEQQGLRERPQW
QALRWDLEELRVSLFAQELGARTGISAKKLAQRVTALRQL
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctatcgacaaaatgccgcagtcccgccagcgccaacagcgtgccgccattgac
ggtgccatgagccgcgaccgtggacgattgctgggaatgctctcgcgttgccaggccaag
ccacaggatgcggcgttggccgccaccttcgagcaggccttgcaggtatcggtgcagcgc
cggcaggctcgggcgcaacagcagccgtccattactctggacccgcagctgccgattgcg
cgtgaagccgacgccatcatcgggctgatccgcgaccaccaggtcgtggtgatcgccggt
gaaaccggctcgggcaagaccacccagctgccgaaactgtgcctggccgcaggccgtggc
caggccggcatgatcggctgcacccagccgcgacggattgccgcacgtgcggtggccagc
cgcgtggcgcaggaactgcagagcgaactgggccagctggtcggctaccaggtgcgcttc
aacgacaaggtcagcgaagacagccgcatcaagttcatgaccgacggcatcctgctggcg
gagatcgccagtgaccgctggttgtcgaactacgacacgatcattgtcgacgaggcgcac
gaacgcagcctcaacatcgacttcctgctgggctacctgaagcagctgctgcgcaagcgc
ccggacctgaagctgatcgtgacctcggccaccatcgacaccgaacgctttgcccagcat
ttcgacaatgcgccggtgatcagcgtcgaaggccgcacctatccggtggaggtgcgctac
cgcgcgctggaaggcgagggcgagcaggagggcgagcgcaccgtcaacgacgccatcgtg
tcggccatcgacgagatcacccgtctggattcgcgcggcgacgtgctgatcttcctgccg
ggcgagcgcgagatccgcgatgcgcaccagtcgctggaacggcgcaagtaccgcaatacc
gaggtgctgccgctgtacgcgcgcctgtccaaccaggaccaggaccgggtgttcaacccc
ggcccgaaccgccgcatcgtgctggccacgaatgtggcggaaacctcgctgacggtgcca
cgcatccgctacgtggtcgatccgggctttgcccgcgtcaagcgctacagtccgcgcaac
aagcttgaccgtctgcacatcgagccgatctcgcaggccagcgccaatcagcgcaagggc
cgctgcggccgtgtggccgagggtatctgctatcgcctgtacgccgaagccgacttccag
gcacggtcggaattcaccgatccggaaatccggcgctccagcctggccggggtgatcctg
cgcatgctgcagcttggcctgggccgcattgaggacttcccgttcctggaggcccccgac
gaacgtgccgtggccgatggctggcagcatctgaccgaactgggcgcgattgacagcgag
cgtcacctgaccgcgatcggcaagcagatgtcgcgcctgccggtggacgtgaagttggca
cgcatgctggtggccgcgcaggccgccggctgcctgcggccgatgctggtgatcgcctcg
ttcctgggcatccaggacccgcgcgaacgcccgcccgaagcgcgcggcgcggctgacagc
gcgcacgcgcagtttgccgatgggcgctccgagtttgtaggtgtgctgcgcctgtgggat
gcctaccggcaggcccacgaagacctgacccaatccaagttgcgcgactggtgtggccgt
catttcctcggcttcctgcgcatgcgcgagtggcgcgagctgcatcggcaactgcgtctg
ctgtgcgaggaactgggctggaaggaagaagccaacgaggcctcgatggcgccgttgctg
gcgggcagcagtgcgccggccgctgcgcgcgacgatgcggcggcagtgaaggccacccgt
ggccagctgcaccgtgcggcgcgcctggcccgcgaaggcaaggccgaggcggcgccggca
ccggtggccgtgcgcgcgcagaaggaacaggcgccggttggcggcggtttcagcgagcgc
gtgcgtgctaccgcctaccagaccctgcatcgggcgctggtggcgggcctgccgacgcag
atcggccaccgcaccgagaaaggtgatttccaggcgccacgccagcgccgcttcctgcca
ttccccggctcgacgctgtccaagcggccgccgccgtggctgctggtggccaacctgctg
gatacgcagaaggtctggggcatgaccctggctgcgatcgaaccggactgggtgatcgcc
gaattgccgcacctgctgctgcgcaaacatttcgatccacactggtcacgcgcgcagggc
caggtgctggcctccgagcagatcagtctgttcgggctggtgctggcgccgaaaaaacca
gtgcactacggccgcatcaaccccggcgaagcgcatgacatcttcgtgcgccaggcgttg
gtgaccggcgagatcactacacgcgccagcttcgtggccgacaaccagaaggtgctggag
atcgcccgcgaggaagaagccaagctgcgccgcgccggtatcgtcgccgacgaggactgg
caggcgcgctggtacctggaccgggtgccgccgcagatccattctgccgcgggactggat
acctggtggaaggggctggcaccggaacagcgcaagcccctgcactggtcgctggttgat
ctgttgccgggcgaaggcagcgagcaggagcgctacccgaagtacctggcgctgggccag
gcgcgcttgccgctgcactaccgcttcgagccaggcgccgacgatgacggggtaaccctg
gaggtgccgctgcacctgctcaacgcgctggacgccgtgcagctgggctggctggcaccg
ggcttcgttgccgacaaggcggccgcgttgatccgcagcctgcccaaggcgatgcgccgc
aactatgtgcctgcgccggacttcgcgcgtgcattcttcgaggcattcccgcagcccggc
gccgacgccatcaccggcgagctggcgcgcttcctgtcgcgcgcgaccggcgccaaggtg
gcagccaccgacttcgagccggattcgatcgaagcccacctgcacatgaacctgcgcctg
cgcgacgagaacggcaaggtacttgcgacctcgcgcgatctggacgcgctgcgtgcaacg
ttcggtggccgagccggcgatgccttcgccgcgcgcgcggggcgcgagatggccgccgat
ggcctgcgtacgttcccggccacgccgattccgctgcaggtgcctggcgaggcgggtgtt
cctgcctacccggcgctgctggacgagggcgacagcgtagccctgcgcatcttcgcggac
cgccagcaggccgaagaagcacatccgcttggcgtgcgccgactgttggaaatcggcctt
ggcgagaagatcaagcaggcgcgcaagcagttgccggtagcggccaagaccggcctgctg
tacgcctcgatcgaaacccaggagcgcctgcggggtgacctggtcgacgccgcattgaac
gcggtgctggccgatggcctgggcgagatccgcgatgcgcaggcgttcgagcaacgccgc
gagcaagcggccaaggcgctgtttggcgaggccatgcagcggctgaagctggccgaggcg
atcctggccctggtggcggaactgaagccgatgctggaagcgccgctgatgggttgggca
cgcggcaatctggatgacatggaggcgcagctggtcgggctgatccaccccggcttcctg
cgcgatacgccggccgacgcgctggcgcagtacccgcgctacctgaaggcgatgatcctg
cgcaccgagcgcgccaagcgcgacccgccgcgtgaccaggcgcgcatgctggaactgcat
ccgttcctggaggcgctgcaggcgggtgagcagcagggcctgcgcgagcggccgcaatgg
caggcactgcgctgggatctggaagagctgcgggtgtcgctgttcgcgcaggagctgggt
gcacgcaccggcatctctgcaaagaaactggcgcagcgggtgaccgcgctgcgccagctg
tga
DBGET
integrated database retrieval system
