Stenotrophomonas maltophilia R551-3: Smal_3103
Help
Entry
Smal_3103 CDS
T00733
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smal_3103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smt03019
]
Smal_3103
03400 DNA repair and recombination proteins [BR:
smt03400
]
Smal_3103
Enzymes [BR:
smt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smal_3103
Messenger RNA biogenesis [BR:
smt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Smal_3103
DNA repair and recombination proteins [BR:
smt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Smal_3103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
PSD2
Motif
Other DBs
NCBI-ProteinID:
ACF52802
UniProt:
B4ST11
LinkDB
All DBs
Position
3473625..3475430
Genome browser
AA seq
601 aa
AA seq
DB search
MASRPAHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGC
GIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLL
TGRFLSLLSRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPEIPRIALTATADPP
TQREIAERLDLQEARHFVSSFDRPNIRYTVVQKDNARKQLGDFLRSHRSEAGIVYCMSRR
KVEETAEFLCTQGFNALPYHAGLPSEVRANNQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGEERKQLERG
KLDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPPASWDATIPAQKALSCVYRS
GQRFGVGHLIDVLRGSENEKVRQQGHDKLSTYAIGRDLDARTWRSVFRQLVAASLLEVDS
EGHGGLRLTDASRDVLTGRRQISMRRDAVSTSTGRERSAQRTGLSVLPQDLALFNALRGL
RAELAREQNVPAFVIFHDSTLRNIAEQRPTSLDELARVGGIGGTKLSRYGPRLVEIVREE
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccgtcccgcgcacgacctgctccaacgcgtctttggttacgacgatttccgt
ggtccccagcaggacatcgtggagcatgtggctgccggtcacgatgccctggtgctgatg
cccaccggcggcggcaagtcgctgtgctaccaggtcccggccctgctgcgtgacggatgt
ggcatcgtcatctcgccgttgatcgccttgatgcaggatcaggtcgaagccctgcgccag
ctcggcgtgcgtgccgagtacctgaattccaccctggatgccgagaccgccggccgcgtc
gagcgcgaactgctcgccggcgagctggacatgctctatgtcgctcccgagcgcctgctg
accggtcgcttcctgtcgctgctgtcgcgcagccgcatcgccctgttcgccatcgacgaa
gcgcactgcgtgtcgcagtggggccacgacttccgcccggaataccgccagctgaccgtg
ctgcacgagcgctggccggagattccgcggatcgcgctgaccgccaccgcagacccgcca
acccagcgtgagatcgccgagcggctggacctgcaggaagcacgccacttcgtcagctcg
ttcgaccgccccaacatccgctacaccgtggtgcagaaggacaacgcccgcaagcagctg
ggtgacttcctgcgcagccatcgcagcgaagccggcatcgtctactgcatgtcgcgtcgc
aaagtggaagaaaccgccgaattcctctgcacacagggcttcaacgccctgccctaccat
gccggcctgccgtcggaggtgcgcgccaacaaccagcgccgcttcctgcgcgaggacggc
atcgtgatgtgcgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttc
gtggcgcataccgacctgcccaagtcgatggaaggctactaccaggaaaccggccgcgcc
ggccgtgatggcgaagccgccgaggcctggctgtgctacgggttgggcgatgtggtcctg
ctcaagcagatgatcgagcagtccgaggccggcgaagaacgcaagcagctggaacggggc
aagctcgaccacctgctgggctactgcgaatccatgcagtgccgccgccaggtgctgctg
gccggattcggtgaaacctaccccaagccctgcggcaactgcgacaactgcctgacgccg
ccagcgtcgtgggacgcgaccattcctgcccagaaggcgctcagctgcgtgtaccgcagt
ggccagcgtttcggcgtcggccacctgatcgatgtcctgcgcggcagcgagaacgagaaa
gtgaggcagcagggccacgacaagctcagcacctacgcgatcggccgcgacctcgacgcg
cgcacctggcgcagcgtgttccgccagctggtggccgccagcctgctggaagtggacagc
gagggccacggcggactgcgcctgaccgatgccagccgcgacgtgctgaccggccgccgg
cagatcagcatgcgtcgcgacgccgtcagcaccagcaccggccgtgagcgcagcgcgcag
cgcaccggcctgtcggtgctgccgcaggatctggcgctgttcaatgccctgcgcggcctg
cgtgccgaactggcacgcgaacagaacgtgccggcgttcgtgatcttccacgacagcacc
ctgcgcaacatcgccgaacagcgcccgaccagcctggacgaactggcccgggtcggcggc
atcggcggcaccaagctgagccgctacggcccgcgcctggtggagatcgtgcgcgaggaa
ggttga
DBGET
integrated database retrieval system
