Stenotrophomonas maltophilia R551-3: Smal_3893
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Entry
Smal_3893 CDS
T00733
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smt03016
]
Smal_3893
Enzymes [BR:
smt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Smal_3893
Transfer RNA biogenesis [BR:
smt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Smal_3893
Prokaryotic type
tRNA splicing ligases
Smal_3893
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
ACF53592
UniProt:
B4SMY3
LinkDB
All DBs
Position
4382665..4383885
Genome browser
AA seq
406 aa
AA seq
DB search
MDTQHNYQWLHAEGTTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHHRMPDSIHTRLVQSGLAAGLENIKDKHRKIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIERAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SAREGELGIIPGSMGTRSYIVRGKGNADSFHSCSHGAGRVMSRGAARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVDVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaacacaactatcaatggctgcacgccgagggcaccacgccgatcaagggc
tgggtcaacggtgtgccgctggaggcgcaggcgcatgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggccgtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggtgcgatcatcccggccgcggtcggcgtcgac
atcggctgcggcatggccgccgtgcgtaccacgctgcgtgccaatgacctgcccgatgac
ctgcggcagctgcgcaacagcatcgagcgcagcatcccggtcggcaatgggcgcggcggc
gagcaccaccgcatgcccgacagcatccatacccggttggtgcaatccgggctggccgcc
ggcctggagaacatcaaggacaagcaccggaagatccgtaccgacaagctggatcgccag
ctgggtacgctgggcggcggcaaccacttcatcgaactgtgcctggacgagacggacacg
gtgtgggtgatgctgcacagcggttctcgcggtaccggcaacctgatcggcacctacttc
atcgagagggcgcgcgaagaacttgcgcgccgtgtgctcggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgtcgaagcagtgtcg
tgggcgcaggattacgccaggcagaaccgcgaggcaatgatgtcgcgggtgctggccgag
atgcgccaccggctgccgaagttccagctggcggcgatggcggtgaactgccaccacaac
tacgtgcagaaggagacgcaccacggccaggagctgctggtgacgcgcaagggcgcggtc
agtgcccgcgagggcgagctgggcatcattcccggcagcatgggcacgcgcagctacatc
gtgcgtggcaagggcaacgcggacagcttccacagctgcagccacggtgccggccgggta
atgagccgtggcgctgcgcgccagcagatcacgctggcccagcaccgcgaggccaccgca
cacgtggaatgccgcaaggacagcggcgtgctggacgagtcgccggcggcgtacaagtcg
atcgacgatgtgatggccgcgcagctcgacctggtcgacgtggtgcacaccctgcgccag
gtgctgtgcgtgaaggggtga
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