Candidatus Karelsulcia muelleri BGSS: IM46_021
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Entry
IM46_021 CDS
T03352
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smub
Candidatus Karelsulcia muelleri BGSS
Pathway
smub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM46_021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smub03021
]
IM46_021
03019 Messenger RNA biogenesis [BR:
smub03019
]
IM46_021
Transcription machinery [BR:
smub03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IM46_021
Messenger RNA biogenesis [BR:
smub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM46_021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA
ATPase_2
AAA_22
AAA_25
Mor
AAA_14
NACHT
AAA_24
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AIN47586
LinkDB
All DBs
Position
complement(14640..15812)
Genome browser
AA seq
390 aa
AA seq
DB search
MFEMNNLRYKNFSIKKNISEYKFEGLVISEGVLEIMPEHYGFLRFYYYNYLSSYDDVYVS
RSQIRLFGMKTGDTIRGEVRTPKNGEKYFTLIKIFQINGRFPSSIIFRKSFEHLTPLFPN
EKFNISEKKVTISTRIVDLFSPIGKGQRGIIVAPPKTGKTTLLKEIANTISYNHPEVYLI
ILLIDERPEEVTDMQRNVNGEVVSSTFDEPAEKHVKVANIVLQKAKRMVECGHDVVILLD
SITRLARAYNTVSPTSGKVLSGGVDSNALHKPKRFFGAARNIEYGGSLSIIATAIIETGS
KMDEVIFEEFKGTGNMELQLDRKIANKRIYPAIDLVASSTRKEELLLNDNTLKTIFFLRK
RLSEMTTVEAIEYIIFRLNKTKNNKEFILM
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatgaataacctaagatataaaaatttttcaataaaaaaaaatataagtgaa
tataaatttgaaggactagtaattagtgaaggagtattagaaataatgcctgaacattat
ggattcttaagattttattattataattatttatcatcatatgatgatgtttacgtatca
cgatctcaaataagactttttggaatgaaaactggtgatactataagaggagaagttcgt
actcctaaaaacggagaaaaatattttactttaataaaaatattccaaataaatggacgt
tttccttcttctataatttttagaaagtcttttgaacatttaactccattatttcctaat
gaaaaattcaatatttcagaaaaaaaagtaactatttctacaagaattgtagatttattt
tctcctataggaaaaggacaaagaggaattatagtagcacctcctaaaactggaaaaaca
actttattaaaagaaatagcaaatacaatatcttataatcatccagaagtatatttaata
attcttttaatagatgaaagaccagaagaagttacagatatgcaaagaaacgtaaatggg
gaagtagtatcttcaacttttgatgaaccagcagaaaaacatgtaaaagttgctaatatt
gttttacaaaaagcaaaaagaatggttgaatgtgggcatgatgtagttattttactagat
tctataacacgtttagctagagcatataatactgtttctcctacatctggaaaagtttta
tcaggaggagttgattctaacgcattacataaacctaaaagattttttggggctgctaga
aatattgaatatggtgggtctctttctataattgctacagcaattatagaaactggatca
aaaatggatgaagtaatatttgaagaatttaaaggtacaggtaatatggaactacaatta
gatagaaaaattgcgaataaaagaatatatccagctatagacttagttgcttctagcaca
agaaaagaggaattattattaaatgataacacattaaaaacaattttttttctcagaaaa
cgtctttctgagatgactactgtagaggctattgaatatataatatttcgtttaaataaa
acaaaaaataataaagaatttatattaatgtaa
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