Skermanella mucosa: JL100_006510
Help
Entry
JL100_006510 CDS
T07652
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL100_006510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_006510
Enzymes [BR:
smuc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JL100_006510
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JL100_006510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UEM22393
LinkDB
All DBs
Position
SKMUc:1398868..1400277
Genome browser
AA seq
469 aa
AA seq
DB search
MHAVELAHPVDFEGWRAAARRMVLADARPEAVDWRVGAQAGLFGDAAAPIVPEAVRNRAF
TVPKDFLELAETVVCHRDPARFALLYGLLWRLTHGEPKLLEIVSDREVHRAEAMARAIRR
DIHKMHAFVRFREREGHYLAWFEPDHFIVERAAPFFARRFTNMDWSILTPDRSVHWDGGT
LHFTPGASRAEVPDEDALEDYWRSYYASIFNPARLKVAAMQSEMPRKYWHNLPEARLIAP
LIRDAGRRAAAMVESGVTLPAPKSGRWAEAVPDVRAPEPEGGLQACRRCTLWRNATQAVP
GEGPTGARLMLVGEQPGDQEDLAGRAFVGPAGQLLDRALVEAGIVRSDCYVTNAVKHFKF
TPRGKRRIHQKPDAGEVEHCRWWLEEEVAAVRPRLIVALGATAGRALLRREVTVQRERGA
VLRLEEGRSMLLTVHPSYLLRLPDPTAKAAEYDRFVTDLKLATSFATAP
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcggtcgagctggcccatcccgtcgatttcgaaggctggcgcgcggcggcgcgg
cggatggtgctggccgacgcccggccggaggcggtggactggcgggtaggcgcccaggcg
ggactgttcggcgatgcggcggcaccgatcgttccggaagcggtacggaaccgcgccttc
accgtgccgaaggacttcctggaactggcggagaccgtcgtctgccaccgcgacccggcg
cgcttcgcgctgctctacggattgctctggcggctgactcatggggagccgaagctgctg
gagatcgtgtcggaccgggaggtccaccgggccgaggccatggcgcgggcgatccggcgc
gacatccacaagatgcacgctttcgtccggttccgcgagcgggaagggcattatctcgcc
tggttcgagccggaccacttcatcgtggagcgggcggcgccgttcttcgcccgccggttc
accaacatggactggtcgatcctgacgccggaccgcagcgtccattgggacggcgggacg
ctgcatttcacccccggagccagccgggccgaggtgcccgacgaggacgcgctggaggat
tactggcgcagctattacgccagcatcttcaacccggcccggctgaaggtcgcggccatg
cagtcggagatgccgcggaaatactggcacaacctgcccgaggcacggctgatcgccccg
ctgatccgcgacgccggccgcagggccgccgccatggtcgagagcggggtgacgctgccg
gcgcccaagtccgggcgttgggccgaggccgtgccggatgtccgggcgccggagcccgag
ggcggtctccaggcctgccggcgctgtaccctgtggcggaacgcgacccaggcggtcccg
ggcgaggggccgacaggagcgcgactaatgctggtgggcgagcagccgggcgaccaggaa
gacctggcaggccgagcattcgtcgggccggcggggcagttgctggaccgggcgctggtc
gaggccggcatcgtgcggtcggactgctacgtcaccaacgcggtcaagcatttcaagttc
acgccgcgcggcaagcgccgcatccaccagaagcccgatgccggcgaggtcgagcattgc
cgctggtggctggaggaggaggtcgcggcggtccgcccgcgcctgatcgtggccttgggc
gccacggccggccgggcgctgctgcgccgcgaggtcacggtccagcgcgagcgcggcgcc
gtcctgcggctggaggaggggcggtcgatgctgctgaccgtgcacccgtcgtacctgctc
cggctgcccgatccgaccgcgaaggcggcggagtacgatcgtttcgtcaccgatctgaag
cttgctacctcttttgcgacggcgccgtga
DBGET
integrated database retrieval system
