KEGG   Skermanella mucosa: JL100_007675
Entry
JL100_007675      CDS       T07652                                 
Name
(GenBank) Rne/Rng family ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
smuc  Skermanella mucosa
Pathway
smuc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smuc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL100_007675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smuc03019]
    JL100_007675
   03009 Ribosome biogenesis [BR:smuc03009]
    JL100_007675
Enzymes [BR:smuc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     JL100_007675
Messenger RNA biogenesis [BR:smuc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     JL100_007675
Ribosome biogenesis [BR:smuc03009]
 Prokaryotic type
  rRNA processing factors
   JL100_007675
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: UEM22617
LinkDB
Position
SKMUc:complement(1675949..1679692)
AA seq 1247 aa
MAKRMLIDATHSEETRVVVVNGNKLDELDFEIASKKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAQERDLEEREDTIGADVEMGDPRPGRGSRR
QGRSESFAEGRDDFGGDTGQQTREPPAAEPSGDVPGTGEQPPYASPPSGADAPEPAGTMP
PDGQPDLDQPAGSNDEPGAVHHAEHDIPHDWFAPEEPAPDFQAENDPGTDRSAGGEAGEQ
EGGSGDGKPTTYQPASLPREERSEPYDPNESYSSDRRPDAAATPSDDPAAVPSAGDAVHS
GAEEMPAPAAELGAGTEPETESAPQAPVAEYSGNLDSDDGDDRNDSQDEDESDDAPRGRR
DDRQGRRGRGDSDEGPVDELVGDEAEDVQRRRPRPLRSYKIQEVIKRRQILLVQVVKEER
GNKGAALTTYLSLPGRYCVLMPNTGRGGGISRKITNPQDRKRLKEMLSDLDIPEGMAVIL
RTAGMERTKPEIKRDLEYLLRLWDSIRDLTLQSSAPALIYEEANLIKRSIRDLYTNDIDE
VHVEGEAGYRVARDFMHMLMPSHTRKVHCYRDETIPLFFRYQVESQIDAIHSPVCQLKSG
GYIVINQTEALVAIDVNSGRSTRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFI
DMEDARNNAAVERRIKEAMKNDRARIQLGRISPFGLLELSRQRLRPSLMETNFEKCPHCT
GTGMVRSIESAALYVLRAIEEEGIRKRSSEITVHVATKIALYILNQKRDALADIERRYGF
RVFLFGDDTLIPPEYRLERIKARQAGEESAPVISPERIYAETDRLLEREAEEDEAAEEVE
VAEPAEAQPIAAAAPQEQAEERGGDRRRRRSRRRRRFDDRTETRTEDQGEEEREETADEP
VEETAFDQQSEDFDNDPDAGGDDDADDGEDGDESENGQADETDANGLRKKRRRGKRGGRR
RGRGRAEGDFENGFGDEGDQQEGPETEPAAEQPAAPAPQGEPRPEPVYGQAYVDDLGDPF
GDIDVSPAPEPAPEPAPRPEPVAEQPQTEPEPAAPEEIAPVMVGEPAVPAEIVAEQPEPA
PVAEVPAAEAPAEAAPAEAAPVAEAPAKPVRKRAPRKKKVAEPAAEAPAVEAPAAEAPAT
EAAPAAEAPAKPVRKRAPRKKKVAEPEPVVEASPVEQVPEPVPEPLPQEPSAGDDLFMDV
APGPVEPAPQPAPETEPAAAPEPAAEAEPAAPEEPPRPARRGWWNRE
NT seq 3744 nt   +upstreamnt  +downstreamnt
atggcaaagcgcatgttgattgacgcgacccattccgaggagactcgggtggtcgtggtc
aatggtaacaagctggacgaactcgatttcgaaatcgccagcaagaagcaattgaaaggc
aatatctacctggccaaggtgactcgggtcgagccatcgctccaggcagccttcgtcgag
tatggcggcaaccgtcacggtttcctggccttctccgaaatccatcctgactattaccgc
atcccggtcgccgaccgcgaagcgctgctcgcccaggaacgcgacctggaagagcgcgag
gacaccatcggcgccgacgtggaaatgggcgatccccggcccggccgcggctcccggcgc
caggggcgctccgagtcgttcgcggagggacgcgacgatttcggcggcgacaccggtcag
cagacccgggaaccccctgcggccgagccttccggtgacgttcccggaaccggcgagcag
cccccctatgcgagccctccgtccggtgccgacgcgcccgagcccgccgggaccatgccg
ccggacgggcagccggacctggatcagccggccggaagcaacgacgagccgggcgccgtc
catcacgccgagcacgatattccccacgactggttcgcgccggaagaaccggcgcccgat
ttccaggcggagaacgaccccggcaccgacaggtcggccggtggcgaggccggggaacag
gagggcggttccggcgacggcaagcccaccacctaccagcctgccagcctgccgcgcgag
gagcgcagcgagccttacgacccgaacgagagctattccagcgaccgccggccggacgcc
gcggccactccgtccgacgatcccgcggccgtcccgtcggcgggcgacgccgtccactcc
ggcgcggaggaaatgcccgccccggcggccgaactgggcgccggcaccgagccggagacc
gaatcagcgccgcaggcgccggtagccgagtattccggcaacctggattccgacgacggc
gacgatcggaacgactcccaggacgaagacgaaagcgacgacgcgccgcgcggccgccgc
gacgaccgacagggccgccgcggccggggcgattccgacgagggtccggtggacgagctg
gtcggcgacgaggccgaggacgtccagcgccgccgcccccgcccgctgcgcagctacaag
atccaggaagtcatcaagcgccggcagatcctgctggtccaggtcgtcaaggaggagcgc
ggcaacaagggcgccgccctgacgacatacctgtccctgcccggccgctactgcgtgctg
atgcccaacaccgggcgcggcggcggaatctcgcgcaagatcaccaatccgcaggaccgc
aagcgcctgaaggaaatgctgtcggacctggacattcccgaaggcatggcggtgatcctg
cgcaccgcgggaatggagcggaccaagccggagataaagcgcgacctggaatatctgctg
cggctgtgggacagcatccgcgacctgacactccaatcgagcgcgccggcgctgatctat
gaggaagcgaacctgatcaagcggtcgatccgcgacctctacaccaacgacatcgacgag
gtgcatgtggaaggcgaagcgggttaccgcgtcgcccgcgacttcatgcacatgctgatg
ccgagccacacgcggaaggtccactgctaccgcgacgagacgatcccgctgttcttccgc
tatcaggtcgaaagccagatcgacgcgatccacagcccggtctgccagctcaagtccggc
ggctacatcgtcatcaaccagaccgaggcgctggtcgcgatcgacgtcaactccggccga
tccacccgcgagcggaacatcgaggagacggcctacaagaccaacctggaggccgccgac
gaagtcgcccgccagttgcgtctgcgcgaccttgccgggctgatcgtcatcgacttcatc
gatatggaggatgcgcggaacaacgccgcggtcgaacgccgcatcaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctcgcccttcgggctgctcgaactgtcg
cgtcagcggctgcgcccgagcctgatggagaccaacttcgagaagtgcccgcattgcacg
ggcaccggcatggtccgctccatcgagtccgccgccctttacgtcctccgcgccatcgag
gaggaaggcatccgcaagcgctccagcgagatcacggtccatgtggcgaccaagatcgcg
ctgtatatcctcaaccagaagcgcgacgcgctggccgatatcgagcgccgctacggtttc
cgggtcttcctgttcggcgacgacacgctgatcccgccggaataccgcctggaacggatc
aaggcccgccaggccggcgaggagagcgcccccgtcatcagcccggagcggatctacgcc
gagaccgatcggttgctcgaacgcgaggcggaggaggacgaggcggccgaagaggtggag
gtcgcggaacccgcggaggcccagcccatcgccgccgccgctccgcaggaacaggcagag
gagcgcggcggcgaccgccgccggcgccggtcccgccgacgccgccggttcgacgaccgg
acggaaacccggaccgaggaccagggcgaggaagagcgcgaggaaaccgccgacgaaccg
gtggaggagaccgcgttcgaccagcagtccgaggacttcgacaatgatcccgacgccggc
ggcgatgacgacgccgatgacggggaggacggagacgagtccgagaacggccaggcggac
gagaccgatgccaacggcctgcgcaagaagcgccgtcgcggcaagcgcgggggacgccgc
cgtggccgcggccgggccgagggcgatttcgagaacggcttcggcgacgaaggcgaccag
caggagggacctgagacggagccggcggccgagcagcccgcggcgcccgccccccagggc
gagccccggcccgaacccgtctacggccaggcctatgtggacgatctcggcgatccgttc
ggcgacatcgacgtgtcgcccgcgcccgaaccggcaccagagccggctccccggccggaa
ccggttgccgagcagccgcagacggagcccgaacccgccgccccggaagagatcgctccc
gtgatggtgggcgaaccggccgttccggcggaaatcgttgccgagcagcccgaaccggca
ccggtcgcggaggtccccgccgccgaagccccagccgaggcagccccagccgaggcagcc
ccggttgcggaagcgccggccaagccggtccgcaagcgggctccccgcaagaagaaggtc
gccgaacccgcagcggaggctccggccgtggaggcgcccgccgccgaagcgccggccacc
gaggcagccccggccgcggaagcaccggccaagccggtccgcaagcgggctccccgcaag
aagaaggtcgccgaaccggaacccgtggtcgaggcatcccccgtcgagcaggtcccggaa
cccgtgcccgagcccctgccccaggagcccagcgccggcgacgacctgttcatggacgtg
gctcccggaccggtggagccggcccctcagcccgcgccggagaccgagcccgccgcagca
cccgaacccgccgcggaagccgagcccgcggcccccgaggaaccgccgcgccccgcccgc
cgcggctggtggaaccgggaataa

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