Skermanella mucosa: JL100_007675
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Entry
JL100_007675 CDS
T07652
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL100_007675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smuc03019
]
JL100_007675
03009 Ribosome biogenesis [BR:
smuc03009
]
JL100_007675
Enzymes [BR:
smuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JL100_007675
Messenger RNA biogenesis [BR:
smuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JL100_007675
Ribosome biogenesis [BR:
smuc03009
]
Prokaryotic type
rRNA processing factors
JL100_007675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UEM22617
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All DBs
Position
SKMUc:complement(1675949..1679692)
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AA seq
1247 aa
AA seq
DB search
MAKRMLIDATHSEETRVVVVNGNKLDELDFEIASKKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAQERDLEEREDTIGADVEMGDPRPGRGSRR
QGRSESFAEGRDDFGGDTGQQTREPPAAEPSGDVPGTGEQPPYASPPSGADAPEPAGTMP
PDGQPDLDQPAGSNDEPGAVHHAEHDIPHDWFAPEEPAPDFQAENDPGTDRSAGGEAGEQ
EGGSGDGKPTTYQPASLPREERSEPYDPNESYSSDRRPDAAATPSDDPAAVPSAGDAVHS
GAEEMPAPAAELGAGTEPETESAPQAPVAEYSGNLDSDDGDDRNDSQDEDESDDAPRGRR
DDRQGRRGRGDSDEGPVDELVGDEAEDVQRRRPRPLRSYKIQEVIKRRQILLVQVVKEER
GNKGAALTTYLSLPGRYCVLMPNTGRGGGISRKITNPQDRKRLKEMLSDLDIPEGMAVIL
RTAGMERTKPEIKRDLEYLLRLWDSIRDLTLQSSAPALIYEEANLIKRSIRDLYTNDIDE
VHVEGEAGYRVARDFMHMLMPSHTRKVHCYRDETIPLFFRYQVESQIDAIHSPVCQLKSG
GYIVINQTEALVAIDVNSGRSTRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFI
DMEDARNNAAVERRIKEAMKNDRARIQLGRISPFGLLELSRQRLRPSLMETNFEKCPHCT
GTGMVRSIESAALYVLRAIEEEGIRKRSSEITVHVATKIALYILNQKRDALADIERRYGF
RVFLFGDDTLIPPEYRLERIKARQAGEESAPVISPERIYAETDRLLEREAEEDEAAEEVE
VAEPAEAQPIAAAAPQEQAEERGGDRRRRRSRRRRRFDDRTETRTEDQGEEEREETADEP
VEETAFDQQSEDFDNDPDAGGDDDADDGEDGDESENGQADETDANGLRKKRRRGKRGGRR
RGRGRAEGDFENGFGDEGDQQEGPETEPAAEQPAAPAPQGEPRPEPVYGQAYVDDLGDPF
GDIDVSPAPEPAPEPAPRPEPVAEQPQTEPEPAAPEEIAPVMVGEPAVPAEIVAEQPEPA
PVAEVPAAEAPAEAAPAEAAPVAEAPAKPVRKRAPRKKKVAEPAAEAPAVEAPAAEAPAT
EAAPAAEAPAKPVRKRAPRKKKVAEPEPVVEASPVEQVPEPVPEPLPQEPSAGDDLFMDV
APGPVEPAPQPAPETEPAAAPEPAAEAEPAAPEEPPRPARRGWWNRE
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcgcatgttgattgacgcgacccattccgaggagactcgggtggtcgtggtc
aatggtaacaagctggacgaactcgatttcgaaatcgccagcaagaagcaattgaaaggc
aatatctacctggccaaggtgactcgggtcgagccatcgctccaggcagccttcgtcgag
tatggcggcaaccgtcacggtttcctggccttctccgaaatccatcctgactattaccgc
atcccggtcgccgaccgcgaagcgctgctcgcccaggaacgcgacctggaagagcgcgag
gacaccatcggcgccgacgtggaaatgggcgatccccggcccggccgcggctcccggcgc
caggggcgctccgagtcgttcgcggagggacgcgacgatttcggcggcgacaccggtcag
cagacccgggaaccccctgcggccgagccttccggtgacgttcccggaaccggcgagcag
cccccctatgcgagccctccgtccggtgccgacgcgcccgagcccgccgggaccatgccg
ccggacgggcagccggacctggatcagccggccggaagcaacgacgagccgggcgccgtc
catcacgccgagcacgatattccccacgactggttcgcgccggaagaaccggcgcccgat
ttccaggcggagaacgaccccggcaccgacaggtcggccggtggcgaggccggggaacag
gagggcggttccggcgacggcaagcccaccacctaccagcctgccagcctgccgcgcgag
gagcgcagcgagccttacgacccgaacgagagctattccagcgaccgccggccggacgcc
gcggccactccgtccgacgatcccgcggccgtcccgtcggcgggcgacgccgtccactcc
ggcgcggaggaaatgcccgccccggcggccgaactgggcgccggcaccgagccggagacc
gaatcagcgccgcaggcgccggtagccgagtattccggcaacctggattccgacgacggc
gacgatcggaacgactcccaggacgaagacgaaagcgacgacgcgccgcgcggccgccgc
gacgaccgacagggccgccgcggccggggcgattccgacgagggtccggtggacgagctg
gtcggcgacgaggccgaggacgtccagcgccgccgcccccgcccgctgcgcagctacaag
atccaggaagtcatcaagcgccggcagatcctgctggtccaggtcgtcaaggaggagcgc
ggcaacaagggcgccgccctgacgacatacctgtccctgcccggccgctactgcgtgctg
atgcccaacaccgggcgcggcggcggaatctcgcgcaagatcaccaatccgcaggaccgc
aagcgcctgaaggaaatgctgtcggacctggacattcccgaaggcatggcggtgatcctg
cgcaccgcgggaatggagcggaccaagccggagataaagcgcgacctggaatatctgctg
cggctgtgggacagcatccgcgacctgacactccaatcgagcgcgccggcgctgatctat
gaggaagcgaacctgatcaagcggtcgatccgcgacctctacaccaacgacatcgacgag
gtgcatgtggaaggcgaagcgggttaccgcgtcgcccgcgacttcatgcacatgctgatg
ccgagccacacgcggaaggtccactgctaccgcgacgagacgatcccgctgttcttccgc
tatcaggtcgaaagccagatcgacgcgatccacagcccggtctgccagctcaagtccggc
ggctacatcgtcatcaaccagaccgaggcgctggtcgcgatcgacgtcaactccggccga
tccacccgcgagcggaacatcgaggagacggcctacaagaccaacctggaggccgccgac
gaagtcgcccgccagttgcgtctgcgcgaccttgccgggctgatcgtcatcgacttcatc
gatatggaggatgcgcggaacaacgccgcggtcgaacgccgcatcaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctcgcccttcgggctgctcgaactgtcg
cgtcagcggctgcgcccgagcctgatggagaccaacttcgagaagtgcccgcattgcacg
ggcaccggcatggtccgctccatcgagtccgccgccctttacgtcctccgcgccatcgag
gaggaaggcatccgcaagcgctccagcgagatcacggtccatgtggcgaccaagatcgcg
ctgtatatcctcaaccagaagcgcgacgcgctggccgatatcgagcgccgctacggtttc
cgggtcttcctgttcggcgacgacacgctgatcccgccggaataccgcctggaacggatc
aaggcccgccaggccggcgaggagagcgcccccgtcatcagcccggagcggatctacgcc
gagaccgatcggttgctcgaacgcgaggcggaggaggacgaggcggccgaagaggtggag
gtcgcggaacccgcggaggcccagcccatcgccgccgccgctccgcaggaacaggcagag
gagcgcggcggcgaccgccgccggcgccggtcccgccgacgccgccggttcgacgaccgg
acggaaacccggaccgaggaccagggcgaggaagagcgcgaggaaaccgccgacgaaccg
gtggaggagaccgcgttcgaccagcagtccgaggacttcgacaatgatcccgacgccggc
ggcgatgacgacgccgatgacggggaggacggagacgagtccgagaacggccaggcggac
gagaccgatgccaacggcctgcgcaagaagcgccgtcgcggcaagcgcgggggacgccgc
cgtggccgcggccgggccgagggcgatttcgagaacggcttcggcgacgaaggcgaccag
caggagggacctgagacggagccggcggccgagcagcccgcggcgcccgccccccagggc
gagccccggcccgaacccgtctacggccaggcctatgtggacgatctcggcgatccgttc
ggcgacatcgacgtgtcgcccgcgcccgaaccggcaccagagccggctccccggccggaa
ccggttgccgagcagccgcagacggagcccgaacccgccgccccggaagagatcgctccc
gtgatggtgggcgaaccggccgttccggcggaaatcgttgccgagcagcccgaaccggca
ccggtcgcggaggtccccgccgccgaagccccagccgaggcagccccagccgaggcagcc
ccggttgcggaagcgccggccaagccggtccgcaagcgggctccccgcaagaagaaggtc
gccgaacccgcagcggaggctccggccgtggaggcgcccgccgccgaagcgccggccacc
gaggcagccccggccgcggaagcaccggccaagccggtccgcaagcgggctccccgcaag
aagaaggtcgccgaaccggaacccgtggtcgaggcatcccccgtcgagcaggtcccggaa
cccgtgcccgagcccctgccccaggagcccagcgccggcgacgacctgttcatggacgtg
gctcccggaccggtggagccggcccctcagcccgcgccggagaccgagcccgccgcagca
cccgaacccgccgcggaagccgagcccgcggcccccgaggaaccgccgcgccccgcccgc
cgcggctggtggaaccgggaataa
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