Skermanella mucosa: JL100_008255
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Entry
JL100_008255 CDS
T07652
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03420
Nucleotide excision repair
smuc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL100_008255
03430 Mismatch repair
JL100_008255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_008255
Enzymes [BR:
smuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL100_008255
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL100_008255
MMR (mismatch excision repair)
Other MMR factors
JL100_008255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Intein_splicing
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
Hint
Hom_end_hint
DUF3553
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UEM22724
LinkDB
All DBs
Position
SKMUc:1818791..1822291
Genome browser
AA seq
1166 aa
AA seq
DB search
MSDPFHYDDPLNDAVPAVSPATAPAAQRFPYFDGLNEVQREAVETLDGPVLVLAGAGTGK
TRVLTTRLAHLLMTRRASPFQVLAVTFTNKAAREMRERVGALIGAPTEGWWMGTFHALAA
RILRRHAELVGLKSNFTILDSDDQIRLVKQLLKAENIDDKKWPARAVLSVIERWKDRALT
PDKLKPQDGGDMAGGRVVQLYRTYQDRLQSLNACDFGDLLLHNITLFQANPEVLAEYQQR
FRYLLVDEYQDTNVAQYLWLRLLAQKHKNICCVGDDDQCLAEGTLIRMADHTEKRIEDVV
VGDAVLSAQGGGIFAPSFVARTYRREQTGDLVEIELDDGARLVSTPEHRHFSGYRLGAAP
QLYFTYLMHKRGYGFRLGTSQTYTRGQVDPVLGYELRCRQEHGDAVWIVATHESENEARY
LEYTLSLDFGIPTFPFVAREGGSSKGLVHDQAILDRLFRDRPTEGAGDRLLARYGLTRAF
PHYRPQSHSGRRRNVTVTLCGERRGSSPLHRISVIGSDGDDADRLRAIGLSVRPVKKGSP
GWRYESAMADFAALMSIVDQIRDAFDGDVALVQFARFGSGIDAAEQVPEAEVGDVLVAER
PAVRTRASLPMLPAGSVRPGMSMFRGDGALATVRSIRTVQGPATVYDLDITRTHNFVANG
IVTHNSIYGWRGAEVGNILRFENDFPGAKVIRLEQNYRSTGHILAAAAGVISNNQGRLGK
TLWTRSDQGDRVKVRALWDGEEEARWIGEEIEALQRAKVPLSQIAVLVRAGFQTREFEER
FITLGMPYRVIGGPRFYERQEIRDAMAYLRIVVQPDDDLAFERIINVPKRGVGPATIQQL
YQLARARGMPLTEATWQLVQTDELKPKMRTTLRNLMTDFDRWRTLGATIPHTDLAQMVLD
ESGYTDMWKVDKTPEAPGRLENLKELVAAMGEFENLAGFMEHVSLVMDNAEASGTEMVSV
MTLHGAKGLEFDYVFLPGWEDGLFPSQRSMDDTGIAGLEEERRLAYVGLTRARRRAHVSH
AANRRMHGSWVTAIPSRFVGELPEQHVETDAAPGLSAAPAPAFGGGGGFGSGFGGGYRDF
GGGFASRPQRQPPSPRTGPVIEGSAFEVSPRKRPDQPLKRGMRVFHQKFGYGTVKAVDGD
KLEIDFEQAGVKKVLDSFVVPAEKAG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatccattccactatgacgacccgctgaacgacgccgttccggcggtctcaccg
gcgacggccccggccgcgcaacgctttccctatttcgacggcctgaacgaggttcagcgc
gaggcggtcgagacgctggacggtcccgtgctggtcctggccggcgccggcaccggcaag
acccgcgtgctgacgacacggctggcccacctgttgatgacccgccgggcgtcgccattc
caggtgctggccgtgaccttcaccaacaaggccgcgcgcgagatgcgcgagcgggtcggc
gcgctgatcggcgccccgaccgagggctggtggatgggcaccttccacgcgctcgccgcg
cgcatcctgcgccggcatgccgagctggtggggctgaagagcaacttcaccatcctggac
agcgacgaccagatccggctggtcaagcagctgctcaaggccgagaacatcgacgacaag
aagtggccggcgcgcgccgtgctcagcgtgatcgagcggtggaaggaccgggcgctgacg
ccggacaagctgaagccccaggatggcggcgacatggcgggcggccgcgtggtccagctc
taccggacctaccaggaccggctgcagagcctgaacgcctgcgatttcggcgacctgctg
ctgcacaacatcaccctgttccaggcaaaccccgaggtgctggcggaataccagcagcgc
ttccgctacctgctggtcgacgagtaccaggacaccaacgtcgcccaatacctctggctg
cggcttctggcccagaagcacaagaacatctgctgcgtcggcgacgacgaccagtgccta
gccgaaggcaccctgatccgcatggcggaccataccgaaaagcggatcgaggatgtcgtg
gtcggcgacgccgttctgtccgcgcagggaggcggcatcttcgccccgtccttcgtggcc
cggacctaccggcgcgagcagacgggcgacctggtggaaatcgagctggatgacggtgcc
cggctggtcagcacgccggagcaccggcacttctccggctaccggctgggtgcggccccc
cagttgtacttcacttacctgatgcacaagcgtggatacggattccgcctgggaacgtcg
cagacctacacgcgcggccaagtcgatccggtcctgggatacgaactccgatgccggcag
gagcacggggacgccgtctggatcgtcgcgacccacgagagcgagaacgaagcccgctac
cttgaatacacgctgtccctggatttcggcatcccgacattcccgttcgtcgcccgggag
ggcggatcgtccaaggggctggtgcatgaccaggcgatcctcgaccggctgttccgcgac
cggccgacggagggggcgggcgaccggctcctggcgcgatacggcctgacgcgcgcattt
ccccattatcgtccgcagagccactccggacgccgccgcaacgtgaccgtgaccctgtgc
ggagagcggcgcgggagcagccccctgcaccggatctccgtcatcggcagcgatggagac
gatgcggatcgcctccgggccatcggcctttccgtccggccggtgaagaaagggagcccg
ggctggcggtacgagagcgcgatggccgatttcgcggctctcatgtcgatcgtggaccag
atccgggatgccttcgacggcgatgtggcacttgtccaattcgcccggttcggcagcggt
atcgacgcggcggagcaggtgcctgaagccgaggtcggggatgtgctggtcgccgagcgc
ccggcggtgcggacgcgggccagcctgcccatgctgccggcaggctcggtgcgtccaggc
atgtcgatgttccggggcgacggcgcgcttgccacagtccggtcgatccggaccgtccag
gggccggccaccgtttacgacctggatatcacccgcacgcataacttcgtcgccaacggg
atcgtcacccataactccatctatggatggagaggggcggaggtcggcaacatcctgagg
ttcgagaacgacttccccggcgcgaaggtgatccggctggagcagaactaccgttccacc
ggccacatcctggccgcggcggccggcgtcatctcgaacaaccagggacgtctgggcaag
acgctgtggacgcggtccgaccagggcgaccgcgtcaaggtccgggcactgtgggacggc
gaggaggaggcccgctggatcggcgaggagatcgaggcgcttcagcgcgccaaggtgccg
ctgagccagatcgcggtcctggtccgggccggcttccagacccgcgagttcgaggagcgc
ttcatcacgctgggcatgccgtaccgcgtcatcggcggaccgcgcttctacgagcggcag
gagatccgcgacgcgatggcctatctgcgcatcgtcgtccagccggacgacgacctggcg
ttcgagcggatcatcaacgtgcccaagcgcggcgtcggccccgcgaccatccagcagctc
taccagcttgcccgggcgcgcggcatgccgctgaccgaggcgacatggcagcttgtccag
accgacgagctgaagccgaagatgcggacgacgctgcgcaacctgatgaccgacttcgac
cgctggcggaccctcggggccaccattccccataccgacctggcccagatggtgctggac
gagtcgggctataccgacatgtggaaggtggacaagacgccggaggcgccgggccggctg
gagaacctgaaggaactggtcgccgccatgggcgagttcgagaacctcgccgggttcatg
gagcatgtcagcctagtcatggacaatgccgaggccagcggcaccgagatggtcagcgtg
atgaccctgcacggcgccaaggggctggagttcgactatgtcttcctgcccggatgggag
gacggcctgttccccagccagcgctccatggacgataccggcatcgccggactggaggag
gaacgcaggctggcctatgtcgggttgacccgcgcccggcggcgcgcccatgtcagccat
gccgccaaccggcggatgcacggctcctgggtcacggcgatcccctcgcgcttcgtcggc
gaactgcccgagcagcacgtcgagaccgatgcggcacccggcctgtccgcggcgccggca
cccgccttcggcggtggaggcgggttcgggagcggcttcggcggcggctaccgcgacttc
ggcggtggtttcgcatccaggccgcagcggcagccgccaagtccccgcacgggtccggtg
atcgagggcagcgccttcgaggtgtcgccccggaagcggccggaccagccgctgaagcgc
ggcatgcgggtgtttcaccagaagttcggctatggcaccgtgaaggcggtcgacggcgac
aagctggagatcgacttcgagcaggccggcgtcaagaaggtgctggacagcttcgtcgtc
cccgccgagaaagccggctga
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